Contarinia nasturtii (swede midge): 116338923
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Entry
116338923 CDS
T08003
Name
(RefSeq) leucine-rich repeat protein soc-2 homolog
KO
K19613
leucine-rich repeat protein SHOC2
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
116338923
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Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_1
LRR_5
LRR_LRWD1
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
116338923
NCBI-ProteinID:
XP_031620357
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MNCGTSSTSNASTSSDIAMERPKKVTVNLPESSRPKHTTRNKKPIQADLDLIKAFTRCRD
ENFTVLDLSKSSITSIPPAVKDCINLCELYLYGNKLGSLPPEIGGLMNLKVLALNENSLT
SLPDSLSNCKHLKVLDLRHNKLTEIPEVIYELTTLTTLYLRFNRIKEVGFEISKLTNLTM
LSLRENKISELSMGIGYLVNLTTCDVSHNHLRHLPEEIGNCIQLSALDLQHNELYDIPES
IGNLTNLVRLGLRYNNLTSIPESLRNCKKMDEFNVENNYIASFPDGLLASLTSLTLITLS
RNKFTVYPTGGPAQFTNVTTINFEHNHIDKIPYGIFSRAKFLTTLNMKENDLIALPLDIG
TWVQMVELNLGSNALTKLPDDIHSLQNLEILILSNNLLKRLPHTIGSLCKLRVLDLEENR
LESLPNEIGLLHELQRLVLQSNQLTSLPRSIGHLSNLTHLHIGENNLHSLPEEIGTMEKL
ENLYINDNANLLKLPYELSLLENLSIMSIENCPLSAIPPEVLAGGPSLVIQYLKLHSPYR
QM
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtggaacatcatcgactagtaatgcgagtacaagcagcgatattgcaatggaa
agaccaaaaaaagtaacggttaatctacccgagtcatccaggccgaagcatacgacacgg
aacaaaaaaccgattcaggccgatttggatttgattaaagcatttacacgatgtcgtgac
gaaaactttactgtattagatctcagcaaatcatccattacatcgataccaccagcagta
aaagattgcataaatttatgtgaactgtatctgtatggaaataagcttggttcgttgccg
ccggaaataggagggttgatgaatttgaaagtgttggcgctcaatgaaaactctcttacc
tcattgccagactcgctgtcaaattgtaagcatctcaaggtgctcgatttgagacacaac
aaactcactgaaatacctgaagtaatttacgaactgaccacactaactacactctatttg
cgtttcaatcgcattaaggaagtcggctttgaaatcagcaaactcaccaatttgaccatg
ctcagtttgcgtgaaaataaaattagtgaactgtcaatgggaatcggatatctagtcaat
ctcacaacatgtgatgtatcacacaatcatctaagacatttgcccgaagaaatcggtaac
tgcattcaattgagtgcattggatttgcagcacaatgaattgtacgatataccagaatca
attggaaatttaaccaatttggtgcgacttggattgcgttacaataatttaacgtcaatt
cccgaatcgttgcgaaattgcaagaaaatggacgagtttaatgttgaaaacaattacatt
gcatcatttccagacggattattggccagcctaacatcacttacgctaattacattgtcg
cgcaataagtttacggtgtatccaacaggtggaccagctcaatttacaaatgttacaacg
atcaatttcgagcacaatcacatcgataaaataccgtatggcattttttcacgtgcaaaa
tttctcaccacattgaatatgaaagaaaatgatttgattgcactaccgttggacattggc
acctgggtacaaatggttgaattaaatttgggatcaaatgcattaacaaaactacccgat
gacatacattccctgcaaaatttggaaattctcattctatcaaataatttattgaaacga
cttccacacacaattggaagcttatgcaaactgagagtgctagacttggaagaaaatcgg
cttgaatcacttcccaatgaaataggcttactacatgaattacaacgattggttttgcaa
tcaaatcaactgactagtttaccgcgaagcatcggacatttgtcaaatctcacccattta
catattggcgaaaataatttgcacagtttacccgaagaaattggcaccatggagaaattg
gaaaatttatacataaatgataatgcaaatttgttaaaacttccatatgaactatcgttg
cttgaaaatctatcgataatgagcattgagaattgtccattgagtgcaataccaccagaa
gttcttgcaggtggtccatctcttgttatacagtaccttaaattacactcgccctacaga
caaatgtga
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