Contarinia nasturtii (swede midge): 116339284 Help Entry 116339284         CDS       T08003                                  Name (RefSeq) protein PAT1 homolog 1   KO K12617   DNA topoisomerase 2-associated protein PAT1 Organism cns  Contarinia nasturtii (swede midge) Pathway cns03018   RNA degradation Brite KEGG Orthology (KO) [BR:cns00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     116339284  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cns03019]     116339284 Messenger RNA biogenesis [BR:cns03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      116339284   mRNA degradation factors    5'-3' decay     Decapping complex      116339284 SSDB OrthologParalogGFIT Motif Pfam:  DUF6080 MRI Motif Other DBs NCBI-GeneID:  116339284 NCBI-ProteinID:  XP_031620934 LinkDB All DBs Position Unknown AA seq 884 aa AA seqDB search MADTFFGFDTTAPRFDNDGGGLEEQDDYDALNEETFGSAINDDWEGEHENLVLLDSNGNT SGKEKDETDDGDLGDLDFSIARMGLEDCEEVDDDIEGRVQLDPSVWSSRGFNGMIPREHF MPHLLSMPNSGMNIAGPSIANPFQQQLANQSHQQHLLNTSRQPNVPPKIMSVEDLERNQI RNQQMQQKVEPNMKPPTPQNQHQRPNIQQQQQQQPFSQSLAQTSKGQPMFLPHLNVANEL QKNTNQRIPIGFPVNMLPPHMNAQNSQMHPNLARVPPNVLMQQNNFNVNSMRTATPPTPI MQMHQKQMQQPQPPGIQPPTSAQQTSQPHKRVGVGMIPPHMQLPQFQSAQQQQSASVNQF NKRLVHEIQQNHPMLLNAKNNTKGNNAFPFGVPGGVLPGGMNLHHQNMQYHHHQQQQQQQ QQQQQQQHHQNQQQRNSNNNNNNNNNNQHQNRLMNGTLEYDEYANLMSQRDKQWLIGIQL SQLNTGTPYIDDFYYTVFKERRAKLKGIKENKAHKDNQLNHPLIQPKGHAQLVLISMGNK NGTNQQRNQRERKNSESNKDKETPRTYTPLQFENSLGKLQCGSVTAPRKIIDMDVVGADT GSPINSTNEISTQRKSRQILLHIETLYRIALKLEDLEDPTAIATALIVKERKEKAAEQER LMECKDNPDFVPNASRSSSSLSADKEETREELLEKLLTGLTHEKVAQMMTIRKGKTLIKR VLALLKENVYRWDVWIAILAALPLLVKKDREDAESPLFILFPEFQSYIENASIDSILRLT NTLISCEKLSFIFTNKFSISCVIVLIVKMESVYAISPNAITPTQQISWLEFLTALSIAVD KLGNLQLANVAYENDILKPLLNHFSRFHDLKSQTLIAVLTQKNS NT seq 2655 nt NT seq  +upstreamnt  +downstreamnt atggcagacacgttttttggatttgataccacagcaccgcgattcgataatgatggcggt ggactggaagaacaagacgattatgatgcactgaacgaagagacttttggatcggccatc aacgacgattgggagggtgagcatgaaaatctagtgctgctcgacagcaatggaaatacg agcggcaaagaaaaagatgaaactgatgatggcgatttgggagatttagattttagtatc gctcgcatggggttggaggattgtgaggaagtagatgatgatattgaaggacgtgttcaa ttagatccaagtgtatggtcaagcagaggttttaatggcatgattccacgggaacatttc atgccgcatcttctgtctatgccgaactctggaatgaatattgccggtcctagcattgcc aatccatttcaacaacaattggccaatcaatcacatcaacaacacttattaaatacttcc agacagccaaatgtgcccccaaaaatcatgtcggtggaagatttggaacgaaatcaaata cgaaatcagcaaatgcaacaaaaagttgaaccgaatatgaaaccaccaacgccacaaaat caacatcaacggcccaatattcaacaacaacagcaacagcagccattttctcaatcatta gctcaaacgtcaaaaggacaaccgatgtttctaccgcatctaaatgtagcaaatgaattg caaaagaatacaaaccaacgaattccgataggttttccagttaacatgctaccaccgcat atgaatgcccaaaattcccagatgcatccaaatttagctagagtcccacccaatgtttta atgcaacaaaataacttcaacgtgaattcaatgcgtactgctacgccaccaacgccgata atgcagatgcatcagaaacaaatgcaacaaccacaaccgccaggcattcaaccacccaca tcggctcaacaaacatcacaaccacataagcgtgttggtgttggcatgatacctccacat atgcaattaccgcaattccaatcggcgcaacaacaacaatccgcatcagttaatcaattc aacaaacgtttggtgcatgaaatccaacaaaatcatcctatgcttttaaacgcaaaaaac aacaccaagggcaataatgcgtttccgtttggtgtgccaggaggagttttaccaggcgga atgaaccttcatcatcaaaacatgcaatatcatcatcatcaacaacaacagcagcagcaa cagcagcagcaacaacaacaacatcatcaaaaccagcaacagcggaatagcaacaacaac aacaacaacaataacaataatcaacatcaaaatcgtctaatgaatggaacattggaatat gatgaatatgcaaatttgatgagccaacgagataaacaatggttgatcggcatccagttg tcacaattgaatacaggaacgccatacattgatgatttttactatactgtttttaaagaa cgtcgagctaaattgaagggcatcaaagaaaataaagcacataaagacaaccaattgaat catccactaattcagccaaaaggtcatgcacaactagttcttatttcaatgggcaataaa aatggaacaaaccaacagcgtaatcagcgtgaacggaaaaatagcgaatcaaataaagat aaagaaacgccacgcacctatacaccgctacaatttgaaaattcgttgggcaaactacag tgcggcagtgtaactgcaccgcgtaaaatcattgacatggatgttgtgggcgctgatacg ggcagcccaattaattcaacaaatgaaatatccacacaacgtaaatcaagacaaattcta ttgcatatagaaaccttatatcgtatcgcactcaaactggaggatttagaagatccaaca gccattgcaactgcactaattgtgaaggagcgaaaagaaaaggccgctgaacaagagcgc ctaatggaatgcaaagataacccggattttgtaccaaacgcatcgagatcatcatcatcg ttgagtgctgacaaagaagagacacgcgaagaactactggaaaaacttttaacaggattg acacacgaaaaagtagcgcaaatgatgaccattcgcaagggaaagacgttgataaaacgt gtacttgcactactcaaagaaaatgtttatcgatgggatgtgtggattgcgatattggct gcgttgccactactcgtgaaaaaagacagagaggatgctgagagtccactgttcatacta tttcctgagtttcaatcatacattgaaaacgcttcgatagattcaatacttcggcttact aatacgctcatctcttgcgaaaagctcagctttatttttacaaataagttttcaatatcg tgtgtcattgtgctgatagtgaaaatggaaagcgtttatgcaatatcaccaaacgccata actcctacacagcaaatatcatggttagaatttttaacagcattatcaattgcggtcgat aaactgggaaatttgcaactggcgaatgttgcatacgaaaatgatatactaaaaccatta ctaaatcatttttcgcgcttccatgatttaaaatcgcaaaccctaattgcagtgctaacg caaaaaaactcataa

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