Contarinia nasturtii (swede midge): 116339354
Help
Entry
116339354 CDS
T08003
Name
(RefSeq) uncharacterized protein LOC116339354 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116339354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116339354
03019 Messenger RNA biogenesis [BR:
cns03019
]
116339354
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116339354
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116339354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Pfc11_Clp1_ID
Pcf11_helical
Motif
Other DBs
NCBI-GeneID:
116339354
NCBI-ProteinID:
XP_031621054
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MEINDRNDREIADSYLSSLVDLTNNSKPLINMLTMLAEENIKHGQTIVDTVEQRISKVEP
DLKLPILYLIDSIVKNVGDVYVNLFSQSIVKIFIGAFEKVNEDIRKKMFLLRQTWNDVFP
APKLYTLDVKVNAIDHNWPITAQKISPAIHVNPNFFSTTTEKDIQTELQIKQRELLELKK
RKLELELAATQKQLGMTTSHSTMVVDPIVISKSKEMGKPPIISKPINSVNPVTFIPSQIP
PSRPRIAPVNSALVNSMRSRDPRLARQSTQTVAQTQPPLSITSINEHYPSKSLPMGPIPR
INNTNFTSNPDRNQRIQPIDSMPSYNDTTNKNHVNNSNNSVDGLNKDDQKRKISRSPNKP
SKSNIKSGSTNISNSKSKSSSSLSKSSSSKSERSSRSASSSSTSRKSKGRKDDKSPQRKK
TSSRHRSPTSRRSSSPADGQKTSSSSSSSSRKSSSSYDTKSKSSDSKHSKEKNSDSHSSI
SSKSSPTNKNRIRSSRSKSPVLAIKASDSIPKDIDLRAQLSQPISITNSLINSTIIEQDV
IVSTVTTSSVPIGSNAIADRKTNINSDKKFAEDAPKDVDFRVGLIPNIAANQSVIDSKKR
LNEDNDTVEPKIKKTKSEKIDILFGKEDVDLRIPPPLNSISASSAIPALEVDVSTMGSET
NASHAKSNDQVTSSKNTNRDIDLRLHRDSIEDNSEESNDKFRMILQQAQEQVDNNPDVDP
EQIQSMVQQIIKIKCDSEARKTFKRTLVGKPNNKVSENEESAEAFSSGSEDENLKKSHRV
PYKRRRQENDRVQSNSNLPSTTNNNMTKSPNNDPPLAPQKVRQRKTKWNSPWEDQVKPPV
LPMQTLPSNIIPPMPFAPLRPVQQPMNITADAENMRNMRQFSSRNAPESVWQPNAMPFNG
PNVNSLGLMNNAGIPTNLLSGGQIVMAQHGPSLAPCTAKDRTINIDGVPREIRFYDETAI
AFMESNGREPKEIGFQSGERRVCVDNNESILLAFNDTYKAFVINGKTYQIRFGTPTRELY
IDNEWYECYFGDPSVGIVLNGKLHSFRIDGPAPQVRIGNLRNDLVVGKVDMYIDIQTKVS
LFLDAQVQMFQINNQVHTIQFADYFLTVIIDNIPFPVQYGAMPTKFQLSNSEHYIRFAVL
PNNILPGEIYVRNMKRTHLQRDLVSPVPMIGNINNIPVTIPPVSGPILPLMSIVPNPDVI
TSNSSANTLQPNTSQATLPVISESSNPAVDINDLYQKLLASGILNKVKEKEKEKEKEKEK
EKEKPLPVLLNKPETLRKRQSAIINQLFSGSQCSCCGVRFPLEQTMKYSQHLDWHYRQNR
RERDSARRAQSRKWYYSVSDWIQYEEIENVEEREKNWFETQQTEVDSANEESNQRSASPP
PSCIAGPDDHNKTCDVCHDPFETFYNEETEEWHLRNAIRIEECIYHPICYEDYKASLTLD
ESQLNTSNLGDISTDDNAVDLPIKHEDELSMVTGLPVNSNERIPILDDDDDVIVLPQEEP
VITEIPDDDDHEVIDDSTLSNKCSNSQEGESEGTTTNAQGTMCAPQVAGISSQLQSQRKS
NENDSYEDEDAGKNNESDVQILEPHISILNLDEYEETDLSSNKHDESRPLPVVKIKEEPK
YEGYEDDEDDGFEEVGTFEADPTEIFDDGNVEDSQPPIQTQTTMITSLDGNIEMQEEQPV
TIGTNKIKINISKNVQLNKNSINSSESVDNNLENNKESTDAQSQGTVNNKSVITNETDRC
ENGSIDGTSGNSIATTAATDVAATSDSANSGMEIEFEVKDSIKHVQFKRQPVVRSGLETS
GLCSIM
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaacgatagaaacgaccgtgaaatagcagactcttatttatcaagtttggtc
gatctaacaaacaatagtaaaccattgataaatatgttaacgatgttagccgaggagaat
atcaaacatggtcaaacgatagtcgacaccgtcgagcaacgtatatctaaggtggagcct
gatttgaaactaccaattttgtatttgattgattcgattgttaaaaatgttggtgacgtt
tacgttaacttgtttagtcaatccattgtaaaaatatttattggagcattcgaaaaggtg
aatgaagatattcgtaaaaaaatgtttttattgagacaaacatggaatgacgtatttcca
gcgcccaaactttatacacttgatgttaaagtaaatgcaattgatcacaattggccaata
actgcacagaaaatatcaccagccattcatgttaatccaaatttcttttcaacaacgacg
gaaaaagacattcaaacggagctacaaataaagcaacgtgaattattggagttaaagaaa
cgaaaattagaattagaattagcggcaacacagaaacaattgggtatgacaacatcacat
tcaacaatggtcgttgatccgattgtaatttcaaaatccaaggaaatgggaaaaccacct
ataatttcaaaaccaataaatagtgtcaatccagtaacatttattcccagtcaaatacca
ccatcacgaccacgaatagctccagttaattcggcattggtaaatagtatgcgatcgcgt
gatcctcgtttagcacgacaatcaacccaaacagttgcgcaaacacaaccacctctatca
ataacatcaataaatgaacactatccttcgaaatcattacccatgggtcccattcctcgt
ataaataacacaaattttacctcaaaccccgatcgaaatcagcgtattcaaccaattgat
tcgatgccttcatacaatgacacaacgaataaaaatcatgtcaacaatagtaataattca
gttgatggtttaaataaagatgatcaaaagcgtaaaatttctcggtcaccaaataaacca
tccaaatcaaatatcaaatccggaagcaccaatataagtaattcgaaatcaaaatcatcg
tcatcgttatcaaaaagttccagttcaaaaagtgagcgtagctcaagatctgcatccagc
agctcaacgtccagaaaatcaaaaggccgaaaagatgataagtcaccgcaacgaaaaaaa
acatcgtcgagacatcgcagtcctacaagtcgacgtagctcgtcaccagccgacggacaa
aaaacgtcgtcgtcgtcgtcatcgtcgtcacgaaaatcttcttcttcttacgatactaaa
tcgaaatcttctgatagcaagcacagcaaagagaagaacagtgatagtcattctagtatt
agtagtaagtcttcgccaactaataaaaatcgcattagaagtagtcgctcaaaatcaccg
gtcttggcaatcaaagccagtgactcaattccaaaagatattgatcttcgcgcccaatta
tcacagccgattagcattactaactctctaattaactcgacaatcatcgaacaagatgtc
attgtatcgactgtaacaacttcttctgttcctatcggttcgaatgccatcgcggatcgt
aaaacaaatattaattcggacaaaaaattcgctgaagatgcaccaaaagatgttgatttt
cgagtgggactaattccaaatattgcagctaatcaatcagtgattgactcaaaaaagcgt
cttaacgaagacaacgatacggttgagccaaaaatcaaaaagaccaaatctgaaaaaata
gacatattgtttggaaaagaggatgttgatctgagaatcccaccaccattgaatagcatt
tccgcatcatcggcaattccggcacttgaagtagatgttagtacaatgggatctgaaaca
aatgcatcacatgccaaatcaaacgaccaagttactagttctaagaatacaaatcgtgat
attgatttacggcttcatcgcgattcaattgaggacaactcagaagaatcaaacgataaa
tttagaatgattttacaacaagctcaagagcaagtcgataataatccggatgttgatcca
gagcaaattcaaagcatggttcaacaaatcattaaaataaaatgtgattcagaggctcga
aaaacgtttaaacgcaccttggtcggcaagccaaataataaggttagcgaaaatgaggaa
agtgcagaggcatttagttcgggtagtgaagatgaaaatctgaaaaaatcacatcgtgta
ccgtacaagcgtcgtcgtcaagagaatgacagggttcaatcaaactcgaatttaccatcc
accaccaataacaatatgaccaaatcaccaaataatgatccaccattggcaccacaaaaa
gtgcgtcaacgaaagaccaaatggaattcaccatgggaggatcaagtgaaaccgccggta
ctaccgatgcaaacgctcccatcaaatatcattccaccaatgccattcgcaccactacga
ccagttcaacaaccaatgaacatcacagccgatgccgaaaatatgcgcaacatgcgacaa
ttttcatcacgaaatgcacctgagtctgtttggcaaccaaatgcaatgccattcaatggg
ccaaacgttaattctttgggtttgatgaataacgctggcattccgacaaatttgttaagc
ggtggtcaaattgtaatggcacaacatggtccaagtttggcgccatgcacggccaaagat
cgaacgattaatatcgatggcgttccacgggaaattcgtttttatgatgaaacagcgatt
gcatttatggagagcaatggccgagaaccgaaagaaattggttttcaatctggtgaacga
cgtgtttgtgttgacaacaacgaatcgattctattagcattcaatgatacatataaagcg
tttgtgataaatggtaaaacataccaaattcgatttggaacgcccacacgagaattgtat
attgataatgagtggtatgaatgttactttggtgatccatctgttggaattgtattgaat
ggaaaattacattcgtttcgcattgatggacctgctccacaggttcgcattggaaatcta
cgtaatgatttggtggtcggaaaagtcgatatgtatattgacattcaaacaaaggtctca
ctctttttggatgctcaagtgcaaatgttccaaattaacaatcaagtgcacacaatccaa
ttcgctgactactttttgaccgtgatcatcgacaatattccatttccagtgcaatatgga
gccatgccaacaaaatttcaattatccaattcggagcactatattcgttttgcggtgctt
ccaaataatattcttccaggtgaaatttacgtacgaaatatgaaacgaacgcatttacaa
cgggatttggtttcaccggtaccaatgataggtaatataaataatataccggtaacgatt
ccacccgtatctggacccattttaccacttatgtcaattgttccaaatccagatgttatc
acatcgaattcaagcgcaaacacactgcaaccgaatacaagtcaagcaacactacctgtg
atatctgaatcgagtaatccggcagtagatataaatgatctctatcagaaattattggca
tctggaattttaaataaggttaaggaaaaagaaaaggaaaaggaaaaagagaaggaaaaa
gaaaaggagaaaccattgccagttttgttaaataaaccggaaacgcttcgaaaacggcaa
tcagctattataaatcaactattttctggttcacaatgcagttgttgtggtgtccgtttt
ccattggaacaaacaatgaaatacagtcagcatttggactggcattatcgacaaaatcgt
cgggaaagggattcggcacgtcgtgcacagtcacgaaaatggtattatagtgtatctgat
tggattcagtacgaagaaattgaaaatgttgaagaacgcgagaaaaattggtttgaaacg
caacaaaccgaagtggattcggcaaatgaagaatcgaatcagcgatcggcttcaccgcca
ccaagttgtattgccggacccgacgatcacaataaaacttgcgacgtatgccacgatcca
tttgaaacattttacaatgaagagacggaagaatggcatctgcgaaatgccattcgcatc
gaggagtgtatttatcaccccatttgctacgaagattataaggcatcgcttacattggat
gagtcccagctaaatacgtcaaaccttggcgatatttcaacggatgacaatgcagttgat
ttaccaattaaacacgaagacgaattatcaatggtgacaggacttccggtcaacagcaat
gaacgcattccaattttggatgatgatgatgatgtcatcgttttgccacaagaagaacca
gtcatcactgaaattccagacgatgatgatcatgaggtgatcgatgattcaactttatca
aataaatgctcgaatagccaggaaggagaatcagaaggaacgaccacaaatgcacaaggt
acaatgtgtgcaccgcaagttgcgggcatctctagccagctacaaagtcaaagaaaatct
aatgaaaatgattcttatgaagatgaagatgcaggtaaaaacaacgaatctgatgtgcaa
attttagagccacacatttcaatcttaaacttggatgaatacgaagagaccgatttatcg
tcgaataaacatgatgaatcgcgtccattgccagtagtaaaaataaaagaagagcccaag
tatgaaggatacgaagacgatgaggatgatggtttcgaagaagttggcacatttgaagcc
gatcctactgaaatatttgatgatggaaacgttgaagatagtcagccaccgattcaaaca
cagacaacaatgatcacatcacttgatggtaatatcgaaatgcaagaggagcaaccagtt
acaatcggtacaaataagataaaaattaatatatccaaaaatgtacagttgaataaaaat
tcaataaactctagcgaaagtgttgataataatttagaaaataataaagaatcgacggat
gctcaatcgcaaggcaccgtcaacaataaaagtgttattacaaatgaaacagatcgatgt
gaaaatggttcaattgacggaacgtcaggcaacagtattgctactacagcagcaacagac
gttgctgctaccagtgattcagcaaacagtggcatggaaatcgaatttgaggtcaaagat
tctataaagcatgtacaattcaagcggcagccagttgttcggagtggcctcgaaacgtct
ggtttgtgttctattatgtaa
DBGET
integrated database retrieval system
