Contarinia nasturtii (swede midge): 116339441 Help Entry 116339441         CDS       T08003                                  Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism cns  Contarinia nasturtii (swede midge) Pathway cns03008   Ribosome biogenesis in eukaryotes cns03018   RNA degradation Brite KEGG Orthology (KO) [BR:cns00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     116339441   09123 Folding, sorting and degradation    03018 RNA degradation     116339441  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cns03019]     116339441    03009 Ribosome biogenesis [BR:cns03009]     116339441    03016 Transfer RNA biogenesis [BR:cns03016]     116339441    03036 Chromosome and associated proteins [BR:cns03036]     116339441 Messenger RNA biogenesis [BR:cns03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      116339441   mRNA degradation factors    5'-3' decay     5' exonucleases      116339441 Ribosome biogenesis [BR:cns03009]  Eukaryotic type   Pre-60S particles    RNases     116339441 Transfer RNA biogenesis [BR:cns03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     116339441 Chromosome and associated proteins [BR:cns03036]  Eukaryotic type   Gene silencing    piRNA pathway     116339441 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  XRN_M XRN_N XRN1_D1 XRN1_D2_D3 SH3_12 EC042_2821 Motif Other DBs NCBI-GeneID:  116339441 NCBI-ProteinID:  XP_031621171 LinkDB All DBs Position Unknown AA seq 1629 aa AA seqDB search MGVPKFFRYISERYPNLSELVGSAELPQFDNMYLDMNGIIHVCSHPDDSNVHFRMSEEQM FRDILHYIDTLFHMIQPRKLFFMAVDGVAPRAKMNQQRSRRFQSARTALELIEKAKKANE KLPEESRFDSNCITPGTIFMERLQQAFKHFVKLKLSTDPAWQHCRVILSGHETPGEGEHK IMEYIRYLKAQSSYDPNTRHCLYGLDADLIMLGLCTHEPNFALLREEVKFDKNAKRAPSV DETKFYLLHLGLLREYLELEFIELKPALSFEYDLEKIIDDWIFMCFMVGNDFLPHLPNLH INSNALPILYKVYKTVLPQLDGYMNEVGKLNLKRFEVFMGAMSDIDRDLFRERYEDLQYM ESKRNDAETFGTATEEITAETKTDLDELIRQTNLDFGSGTSSSDDSGDSDSEGEFMFDGQ EREEVFKGCEEEDELSDDELFEKEFKLHKRDYYINKLKYPEMTEEVLAEQTKCYITALQW TLGYYYRGVCSWSWYYPHHYAPYISDISNFAHLNLDFALGKPFLPFEQLLSVLPAASKEL LPKVYHSLMTDPNSKIIDYYPVDFETDLNGKKQEWEALVLIPFINEMRLMDAMNDCNDKL SEHERIRNSHGPMLQYDYCATNQGSQPECLGQQMIGHVFCKETKIDRSEIIVPEDKLVLG PCPRAQKDVYFPGFPTMRHLKHSGKLETKRVKVFHQPTRNESMIIKIDEKPPHVDIQTLA QQFIDKEIYVGWPHLREAKVCGVSDANTKIEKTGIEVFDGKNGNPNSNSEFKLLVKHVKD HHLTRLGVDLGETDQLLHVYPLLNREYLNTGDGKLTLSKNWSKIPLAIAPISVVQNVVVF AKDLENFKRVEDVFTKNSTVFLMNKGYYGCQSTILDEHFYNGRIKLTTTAHPVPDFTTAK QLYEHELHGYVNAWIAGSQSGVSSHLFNRITGIVFIYYGERRYPVSDNDKKINVGLQFKH FKQNEEVPGYTKSFNNQWLYSQETINVVQSYAMKFPQLFQLMNKQGKAQSDPIFESDLNA DKKEDEENVLKQIQQWLKGLPCRTIARQPCGTQCLSRQAIDQVAKIIDNLRNEPIRKVSL QVKPHLLYKPNLNDIKVLPDPSATFELFDRVVIARDQYSVPLGLRGTIISILPRNDPNPI RQENINVVDYIYEILFDEPFELGTSIPDIAEKRVFKVRKSVLINITHGAGRPIKEQRSFG MTQRQKNGAVNEPLPPQNAWRVKPFEPRFERKEVLAKDVLVKPSEPPKSWRVPDNKALER KENDVTPVNVNPVEPPTAEFELINLADKVNARERQMRTISTEEDVLKKMLGLSQNKSLAE SQPNGNGNINNDMHRIDLNALFGKAEKNATDLGNGQLPLPLPTLSNLPKPPASWHQKSKN NETNNASQQFLSQLQQPSQQHPLYAPNVPMNIPPPQMHHQPFFPPHMLPPTNMMPYGHEM FTHGIPPPPHVPPHVPPYMYRPPMYMQAPNYPMHQMMPVIPGPQPFNHQQIRMSAHYDAS HYDASHRQMNEPTTIKHNSPEGPQKLKPKNGTSSAFIPLQAARKGIKGKSNANTDLAAKQ DTNLDKSTEEDKNVQSPEVEILKNNGTPAKAVPQIKQKSETKNKENKKDASNFKPPPKRL ACNFSVTNN NT seq 4890 nt NT seq  +upstreamnt  +downstreamnt atgggagtcccgaaattctttcgctatatcagcgaacgctatcccaatttaagtgaatta gtgggatcagctgagctaccacaatttgataacatgtatttggatatgaatggaattatt cacgtttgctcgcatccggacgattcaaatgttcattttcgcatgagtgaagaacaaatg tttcgtgatattttgcactacattgatacattattccacatgattcaaccgcgtaaatta tttttcatggctgttgatggcgttgctccacgtgctaaaatgaatcaacaacgtagcaga agattccaatcagcccgaactgctttggagttgattgaaaaggcaaagaaggcaaatgaa aagctacccgaagagagtcgattcgatagcaactgcattacaccgggaactatatttatg gaaagacttcaacaggctttcaagcattttgttaagctaaaattatccaccgatccagca tggcaacattgtcgcgttattttaagcggacacgagacgccgggcgaaggcgagcataaa atcatggaatacattcggtatttgaaagcacaatccagctatgacccaaacacacgtcac tgcttatatggattggatgccgatttgataatgttgggtttgtgtacacatgaacccaat tttgcgttgttgcgcgaagaagttaaatttgataagaatgcaaagcgtgcaccatccgtt gacgaaacaaagttttatttactgcacttgggattactcagagaatatttggaactggaa tttatcgaattgaaacctgcattatcatttgaatatgatttagagaaaattatcgacgat tggattttcatgtgttttatggttggcaatgattttttgccacacttgccaaatttacat atcaactccaatgctttgccaatcctatacaaagtgtacaaaacagtattgccacaactt gacggatacatgaatgaagtgggtaaactgaacttgaagcgattcgaagtgtttatgggt gcaatgagcgatattgatcgcgacctattccgtgaaagatatgaagacctccagtatatg gagtcaaagcgtaatgacgccgaaacatttggtaccgcgacggaagaaataactgccgag acaaagactgatttggacgaactgattagacaaaccaatttggactttggttcgggtaca agtagctcggatgatagcggtgacagtgacagtgaaggtgaattcatgtttgatgggcaa gagcgggaggaagtttttaaaggttgtgaagaagaagacgaactttccgatgacgaactc ttcgaaaaagaatttaaattgcacaaacgcgattattacataaacaaattaaagtatccg gaaatgaccgaggaagtattggccgaacaaacaaagtgttatatcacagcattgcaatgg actttaggttattattatcgtggtgtatgctcttggtcatggtattatccgcatcattat gctccgtacatatcggacatttcaaattttgcgcacctcaatttggattttgcattgggt aaaccatttttaccattcgagcaattgttatccgtcttgccggccgccagtaaagagtta ttgccaaaggtgtaccacagcttaatgaccgatccgaatagcaagattatcgattattat cccgttgactttgaaacggatttgaatggcaagaaacaagaatgggaagcactagtttta attccatttatcaatgagatgcgattgatggatgctatgaatgattgtaatgacaaacta agcgaacatgaacgtattcgtaattcacacgggccaatgctacagtatgattactgtgca actaatcaaggctcgcagccggaatgcttgggtcaacaaatgattggtcacgttttttgc aaagaaacaaaaatcgatcgatccgaaataattgtacctgaagataaactagtgttagga ccatgtccacgcgcccaaaaagatgtttacttccccggttttccaacaatgagacatttg aaacattcgggaaaactggaaacaaaacgtgtcaaagtattccatcagccaacgcgtaat gaatcgatgatcataaaaattgacgaaaaaccaccacatgtcgatattcaaacattggcc caacagttcattgacaaggaaatttatgtgggttggccacacctgagggaagcaaaggta tgcggtgtaagtgatgccaacaccaaaattgaaaagacaggaattgaagtatttgatggt aaaaatggcaaccccaattcgaatagcgaatttaaattactggtcaaacatgttaaagac catcacttgacgcggctcggcgtcgatttgggtgaaacagaccaattgttacacgtctat ccgttgctaaatcgtgaatatctaaatacgggcgatggcaaactaactctatcgaaaaat tggtcaaaaattccattggccatagctccaatatcggttgtacaaaatgtagttgtattt gcaaaggatttagagaattttaagcgtgttgaagacgtattcactaaaaattcgaccgtt ttcttaatgaacaaaggctattatggatgccaatcgacaattcttgatgaacatttctac aatggtcgcataaaactgacaactacggcacatccggtgcccgatttcaccacagccaaa caattgtatgagcatgaattgcatggatatgttaatgcatggatagccggttcccaaagt ggtgtatcgtcgcacttattcaatcgaatcactggtatcgttttcatttactatggagag cgtcgctatccagtttcagacaatgacaagaagatcaatgttggacttcaatttaaacat tttaaacagaatgaagaggttcccggctatacaaaaagcttcaacaatcaatggctctac tcacaagaaacaatcaatgtggttcaatcatatgccatgaaatttccacagctatttcaa ttgatgaataaacagggaaaagcacaatccgatccaatatttgagtccgatttaaatgct gacaaaaaggaggacgaggagaatgttctgaaacaaattcaacaatggctcaaaggttta ccgtgcagaacaattgcacgacaaccatgtggcactcaatgcctctcacgacaagcaatc gatcaagttgcaaagattattgacaatctacggaatgaaccaattcgaaaagttagtcta caagtaaaaccgcatcttttatacaagccaaatttgaacgatataaaagtgttgccagat ccatcggccacatttgaactattcgatcgcgttgtcatagccagagatcaatattcggtg ccattgggcttgcgtggaacaatcatatcgatattgccacgaaatgacccaaatccaatt cgacaagagaatatcaatgttgtcgattacatttatgaaatattgttcgatgaaccattc gaactgggcacatcaattcctgacatcgccgaaaaacgcgtattcaaagtacgcaaatcg gtattgattaatattactcatggtgcaggtcgtccgatcaaagagcaacgatcatttgga atgactcaacgccaaaagaatggtgcagtcaatgagccattacctccgcaaaatgcatgg cgagtgaaaccgtttgaaccaaggtttgaacgcaaagaagtgctcgcaaaagacgtgctg gtaaaaccaagtgagccaccaaaatcgtggcgagtgcccgataataaagcacttgaacgc aaagaaaatgacgtcacacctgtaaatgtaaatcccgtcgaaccaccgacagccgaattt gaattgattaatttggctgacaaagtaaatgcaagggaacgtcaaatgcgaaccatttcc acagaagaagatgtgctcaaaaaaatgcttggcttaagtcaaaataaatcccttgccgaa agtcagccaaacggtaacggtaacattaataacgatatgcatcgtatcgatttgaatgca ctgtttggtaaagcagagaagaatgcaaccgatttgggtaatggtcaattgccattgcca ttgccgacgctttctaatcttccaaagccaccggcatcctggcatcaaaagtcgaaaaat aatgaaacgaacaatgcttcacagcaatttttgtcgcaattacaacaaccatcacaacag catccactatacgcgccaaatgtgccaatgaatatcccaccaccacaaatgcatcaccag ccatttttcccaccgcatatgttacctccaacgaatatgatgccatatggtcatgagatg tttacgcatggaattccaccgccaccgcatgtaccaccgcatgtgccaccgtacatgtat cggcctccaatgtacatgcaagcaccgaattatccgatgcatcagatgatgccagttatt ccagggccacaaccattcaatcatcaacaaatccgaatgtcagctcattacgatgcatcc cattacgatgcatcacatcgacaaatgaatgaaccgacaaccattaagcataattcaccc gaaggtccacaaaaattaaaaccaaaaaatggcaccagcagtgctttcattccactacag gctgccagaaaggggattaagggaaaatccaacgcaaacactgacttggcagcgaaacag gatacaaatttagataaatcgacagaagaagataaaaatgtacagagtccagaagtagaa atactcaaaaacaatggcacaccagcaaaagcggtgccacaaatcaaacaaaaatccgaa actaaaaataaagaaaacaaaaaggatgcatccaattttaagccgccaccaaagcgattg gcttgtaacttttcggttacaaataattaa

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