Contarinia nasturtii (swede midge): 116340021
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Entry
116340021 CDS
T08003
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116340021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116340021
03036 Chromosome and associated proteins [BR:
cns03036
]
116340021
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116340021
Coactivators
SAGA/TFTC/STAGA complex
116340021
Chromosome and associated proteins [BR:
cns03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116340021
STAGA complex
116340021
TFTC complex
116340021
SAGA complex
116340021
SLIK complex
116340021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_RIG_1st
SLATT_fungal
IL12
HTH_71
Motif
Other DBs
NCBI-GeneID:
116340021
NCBI-ProteinID:
XP_031622014
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MAQNRTEILAVLQLLKKYNFKNAEEQLRKDANLTDIPDNVPVDSDVSSVLAAYKSEGDPD
LYEYAYMELRRFVDESLDIYKHELAMILYPVFVHMYLELVYNDHEEQAKKLIEKFGAEQE
HYYHEDITRLATVTKRDQMSGNDLAETFKSNEFIIRISRDTLSLLKRHLQEKKQSVIMNI
VNEHLYFDLYEGVARNKVQCEATAGAMTGEAKRQDNKVKVYYGLLKEPDMQTLAQPQEED
DDLDPDAPDKPKKKKSKKDPLFSKKSKSDPNAPPIDRMPLPELRDIDKQEKVRAMREAMK
RVPLGPDSLPSVCFYTILNSSNSVTCAEICDDTSLVAIGFSDSMLRVWSLTPSKLREMKP
ADQLKEVDKDADDVLVRMMDDRTAESSRTLLGHNGPVYRAAFSNDRTMLLSCSEDTTIRL
WSLQTWTCLVVYRGHLNPVWDIRFSPHGHYFATASHDKTARLWATDSHHPLRIFLGHLSD
VDCVLFHPNSNYIATGSSDRSVRLWDCVSGNFVRLMTGHKAPIYSMAFSTCGRFLATGSA
DCRCLIWDLAYGHLIAAFTGHTSTVHTLCFSRDGTILATGSLDCTLRLWDFTKLCEDITG
ENVNVSHNPDVRDGEQYLLRSFPTKSSPFIGLHFTRRNLLLAVGLFSSDSNNQSKDLH
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaatcgaactgaaattttggcggtgctacaattattgaaaaaatacaatttt
aagaatgccgaagagcaattgcgaaaggatgcaaacctaaccgatattccggacaatgtg
ccggtcgattccgatgtgagtagcgttctagctgcatacaaaagtgaaggcgatccagat
ttatatgaatatgcctacatggaactgaggcgtttcgttgacgaatcactggatatctac
aaacatgaattagcaatgatattgtatccggtattcgtgcatatgtatctggagctagtg
tacaatgatcatgaagagcaggcgaagaaattaattgaaaaatttggcgccgaacaagag
cattattatcatgaggatattacacgattggcaacagtcaccaaacgtgatcaaatgagt
ggcaacgatttggccgaaacatttaaatccaatgagttcattattcgtatttcacgtgat
acattatcactgttaaaacgacatttacaagagaaaaaacaatcggtcattatgaatatt
gtgaatgagcatttatactttgatttgtatgagggcgttgcacgaaataaggtgcaatgt
gaggcgacggccggtgcaatgaccggcgaagcaaaacgacaagataataaggtgaaagtg
tattatggtttattgaaagagcctgatatgcaaacattggcacaaccacaagaggaagac
gacgatttagatccagatgcaccagacaaaccaaagaaaaagaaatcaaaaaaagatcca
ttattttcgaaaaaatccaaatcggatccgaatgcaccgccaatcgatcgaatgccattg
cccgagttgcgtgacattgataaacaagagaaagtgcgtgcaatgcgcgaagcaatgaaa
cgtgttccactcggaccggatagtttgccgtcggtatgcttttacacaattttaaattca
tcgaatagcgtaacatgtgccgaaatatgcgatgataccagtttggttgcaattggtttt
tccgattcaatgctacgcgtttggtcactaacgccgagtaaattacgcgaaatgaaaccg
gccgatcaattaaaagaagttgacaaagatgctgatgatgtgctagttcgaatgatggat
gatcgaacagccgaatcaagtagaacgttactcggtcacaatggacccgtgtatcgtgca
gcattttcaaatgatcgcacaatgctcctatcgtgttcagaagatacaacgattcgttta
tggtcacttcaaacgtggacatgtttagttgtgtatagaggtcatttgaatcctgtgtgg
gatattcgattttcaccgcatggtcattactttgcaaccgcttcacatgataaaacagca
cgtttatgggcaaccgattcacatcacccgctgcgaatatttttaggtcatttgtccgat
gttgattgtgtccttttccatcccaattcgaactatattgcaaccggttcgtcggatcga
tcggtacgattatgggattgtgtatctggaaattttgttcgtttaatgaccggacacaaa
gcaccaatttattcgatggcatttagtacatgcggtcgatttttggccaccggttcggcc
gattgtcgatgtttaatttgggatctggcctatggccatttgattgccgcatttaccgga
catacaagcaccgtacatacactttgttttagccgtgatggtacgatacttgccaccgga
tcacttgattgtacattacgtttatgggactttacaaaattatgcgaagacatcaccggc
gaaaatgtgaacgtttcacataatccggatgttcgagatggcgaacaatacttacttcga
agctttccaaccaaatcatcgccattcatcggcttacattttacaaggaggaacctattg
cttgcggttggactgttttccagcgatagcaataatcaatcaaaagatttgcattaa
DBGET
integrated database retrieval system
