Contarinia nasturtii (swede midge): 116340055
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Entry
116340055 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116340055
03016 Transfer RNA biogenesis [BR:
cns03016
]
116340055
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116340055
Spliceosome [BR:
cns03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116340055
Transfer RNA biogenesis [BR:
cns03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116340055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
116340055
NCBI-ProteinID:
XP_031622095
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MTAFEEFGVLPEIAKAVEEMEWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQTVYETLRDIRDGKGKNAPSTSGSSKTMWKMSIYDRNNAMAITPDGLRCQSREFKDWNG
CRATAGVRNRGKYFFEAIVCDEGLCRVGWSTQSASLDLGTDRFSFGFGGTGKKSHNRQFD
DYGEAFGKNDVLTCLLDLERSEISYLKNGVNLGVAFRINDNLRNETFYPAVVLKNAEIQF
NFGETPFKYNAPQGYVACVQVNAENVKANSISQSQSQQTLQPKPNAPQAIIIEPSRELAE
QTLEQIHKFKKYMKEPFIRELLVIGKVPIREQIEVLKNGVDIIVATPGRIEELINSEQLL
LTHCRFFVLDEADGLLKANYGNLIENIHRRIPKMTSDSHRLQMIVCSATLHSFEVKKMAD
KLMHFPTWIDLKGEDAVPDTVHHVVCIVDPQTDTTWHSLRRHVQTDGVHAQDGVRPGLNT
PETFSEAIKMLKGEYCIRAINEHNMDRAIIFCRTKMDCDNLERYLRQMDTNKYSCVCLHG
DRKPQERKQNLEMFKNKERKFLICTDVAARGIDVSGLPFMINITLPDEKSNYVHRIGRVG
RAERMGLAISLVSSVPEKVWYHGEWCSSRGRNCWNTNLINVKGCCTWLNEKNMLADIEDH
LNITITQVDKNLKVPVNEFDGKVVYGQKLQNRGTNYQDHVEQLKPIVQNLAKLESKAQLA
FLKHMKIH
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgacggcctttgaggagtttggtgtgttgcccgaaattgccaaggctgtagaagaaatg
gaatggacgttaccaactgatgttcaagccgaagcgattccattgatcctgggtggtggt
gatgttttgatggctgctgaaacgggaagcggtaaaaccggagcattttgtttgccaatt
ttgcaaacggtgtatgaaacattacgagatattcgtgacggaaaaggtaaaaatgcaccg
tcaacaagcggttcgagtaaaacaatgtggaaaatgtcaatatatgatcgaaataatgca
atggcaataacgccagacggtcttcgatgtcagtctcgtgaatttaaagattggaatggt
tgtcgtgcaacggccggcgtaagaaatcgtggcaaatactttttcgaagcaattgtttgc
gatgaaggattgtgtcgtgtcggttggtcaactcaatcggctagtctggacttgggaacc
gatcgtttcagctttggttttggtggcaccggaaagaaatcacacaatcgtcaattcgat
gattatggtgaagcatttggtaaaaatgatgtgctcacttgtttacttgatttggagcga
agtgaaatttcttacttgaaaaatggtgttaatcttggcgttgcatttcgtatcaatgat
aatttacgtaacgaaacattctatccagctgttgtgctcaaaaatgcagaaattcaattc
aattttggtgaaacaccattcaaatacaatgcaccacagggatatgttgcttgcgttcaa
gtgaatgcagaaaatgttaaagctaattccataagtcaatcacaatcacagcaaacactg
caaccaaaaccaaatgcaccacaagcaataatcatagagccatcgagagaattggccgaa
caaactcttgaacaaattcataaattcaaaaaatacatgaaagagccattcatcagagag
ttgctagtcatcggaaaggtaccgattcgagaacaaatcgaagtgcttaaaaatggtgtc
gatatcatcgttgcaacgcccggccgaattgaagaattgatcaattcagaacaattattg
ctcacacattgccgattttttgtactggacgaagccgacggtttactaaaagccaattat
ggaaatttaattgaaaatattcatcgaagaataccgaaaatgaccagcgactcgcatcgt
ttgcaaatgattgtatgtagtgcaacattgcattcatttgaagtgaagaaaatggccgat
aaactcatgcacttcccgacctggatcgatttgaaaggtgaagacgctgtaccagatacg
gttcatcatgtcgtttgcattgttgatccgcaaacagacaccacctggcacagtcttcga
cgtcatgtccaaactgacggcgttcatgctcaggatggcgttagacctggcctaaataca
cccgaaacattctctgaagcaattaaaatgctcaaaggtgaatactgcattcgagccatt
aatgaacataatatggatcgcgccatcatattttgtcgaaccaaaatggattgcgataat
ttggagcgatacttacgacaaatggataccaacaaatattcatgtgtttgcttacacggt
gaccgaaagccacaagaacgaaagcaaaatttggaaatgttcaaaaataaagagcgaaaa
tttctgatttgtactgatgtagctgcccgcggtattgatgtcagcggattgccattcatg
atcaatataacgctgccggacgaaaaatcaaactatgtacatcgaattggtcgtgttggt
cgagctgaacgtatgggcttggctatcagtttggtttctagtgttcccgaaaaggtgtgg
tatcacggtgaatggtgctcatctcgcgggcgtaattgctggaacactaatttgataaat
gtcaaaggatgttgcacttggctcaacgaaaaaaatatgttggcagatattgaagatcat
cttaatatcactatcacacaagttgataaaaatctaaaagtaccagttaatgaatttgat
ggaaaagtcgtttacggacagaaattacaaaacagaggaacaaactaccaagatcatgtg
gaacaactaaaaccaattgttcaaaatttggccaaactcgaatcaaaagcccaacttgca
tttttgaaacatatgaaaatacattag
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