Contarinia nasturtii (swede midge): 116340084
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Entry
116340084 CDS
T08003
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03013
Nucleocytoplasmic transport
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116340084
09122 Translation
03013 Nucleocytoplasmic transport
116340084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116340084
03041 Spliceosome [BR:
cns03041
]
116340084
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116340084
Spliceosome [BR:
cns03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116340084
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
PH_FT_N
Motif
Other DBs
NCBI-GeneID:
116340084
NCBI-ProteinID:
XP_031622157
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MVNKREKESDRESIDSKKHRKSNSSNSTEVPAKQVKVDVYANVIQFEEEESKKRSADVDA
DLFLETCEKLKTIFAEIAQLKTQNSSKAQEEIKAKRITGSFLFAQLKKLSRLDKVRLRAG
RDALHKEKLTVDSNKLQLQNLLYEADHLRKEVQQCFQFKSQDEEIDLVDEQKFYEEAPET
ISRPEKTQNDEHARRLARLEWELHQRKELAAMCKTLQTAKESVAREIDSKTNRLQSLMPC
LDQLLKSTRPLQDALEINIEKEWKTEKIARLLPRPLYVAYVNLSAYAEISNKLIDTRIVG
DEDEAKELESTDKVENEGENAGDESDDAGDDDDDPENDGPHSSKKHHHRRQLSTVTTEVN
VYKPHPLSITFKLPAAASNNGPTLSITFYFLPALRFVTVQTKLVDFETEGVAARDVLDPT
KIMNCLLTNENDDNEVLHPKTKYTLHHLSLDPSTFFMKLGEHQLGKPFTWAQNLCGLNFI
VSSKSTVSTFSNNEQTQETVPEIVEKMHTRLKARYQLYRQVLALEQLIGNGSKGAGTNAP
SCILAQWSPITFVEYAERTLATSRFIDENLVTSNHLLYHAVLIRGSAKMDGFISVSPNFP
AECPIWAITLNVNGSRLLSSNSNDIKEMEYWINSIESFKRNVSNVLILQLKRAMSSLDIF
IETESIRLSSSSNEVKAEKTFLNVFRGRARSRPYKVIQNGGSVIYTQI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggtaaacaaacgcgaaaaagagtcagatcgagaatcgatcgatagtaaaaaacatcga
aaatctaattctagcaattcaaccgaagtaccagccaagcaagtaaaagttgatgtttat
gcgaatgtcattcaattcgaagaggaagaatcaaaaaaacgatcggctgatgtggatgcc
gatttatttttagaaacgtgtgaaaaattgaaaacaattttcgctgaaattgcccaactt
aaaacgcaaaattccagcaaagcacaagaagaaatcaaagccaaacgaattaccggctca
tttctatttgctcaactaaagaaacttagtcgattggataaggtgcggctgcgtgccggt
cgtgatgcattgcataaggaaaaattaacggtcgatagtaataaattgcaattacaaaat
ctactgtatgaagccgatcatttgcgaaaagaagtgcaacaatgttttcaattcaagagc
caagacgaagaaatcgatttggttgacgaacaaaaattctatgaagaggcaccggaaacg
atatcacgaccggaaaaaacacaaaacgatgagcatgcacgccgcttggcacgacttgaa
tgggaattacatcaacgcaaggaattggccgcaatgtgtaaaacattacaaacagccaaa
gagagtgttgcacgtgaaattgattcgaaaacaaatcgactgcaatcacttatgccttgt
ttggatcaattgctaaagtcaacacgaccgctacaagatgcacttgaaattaatatcgaa
aaagaatggaaaacggaaaaaatagcacgattgttaccgcgaccattgtatgtggcatac
gtgaatttaagtgcatatgccgaaatcagcaataaacttatcgatacacgcatcgttggt
gatgaggatgaagcaaaagaacttgaaagcaccgataaagtggagaacgaaggtgaaaat
gctggcgatgaatcagatgacgcaggagatgacgatgacgatccggaaaatgatggacca
cattcatcaaaaaaacatcaccatcgacgccaattgagcaccgtgacgactgaagttaat
gtatacaaaccacatccattatcgattacattcaaattgccagcagctgcatcaaataac
ggaccaacgttgtcaattacattctattttcttccggcattacgttttgtgactgtacaa
acaaaattggttgattttgaaacagaaggtgttgcagccagagatgtattggatccaaca
aaaattatgaattgtttattgacgaatgaaaatgacgataacgaggtgcttcatccaaaa
accaaatacacattgcatcatttgtcattggatccgtccacatttttcatgaaattgggt
gaacatcaattgggcaaaccctttacatgggcacaaaatttgtgcggtttgaattttatc
gttagttcaaaatcgacggtatcaacattttcaaataatgaacaaacgcaagaaacggta
ccagaaattgttgaaaaaatgcatacacgattgaaggcacgttatcaattgtatcggcaa
gtgttggcattagagcaactcattggaaatggttcgaaaggcgccggtacaaatgcacca
tcttgtatattagcacaatggtcaccaattacttttgttgaatacgctgaacgtacattg
gccacaagtcgttttattgatgaaaatttggtcacgtcaaaccatctcttgtatcatgct
gtattgattcgtggttcggccaaaatggatggttttattagtgtttcgccgaatttccca
gctgaatgtccaatatgggccataacactcaacgtgaacggatctcgattgctttcatcg
aacagcaatgacattaaggagatggagtattggatcaattccattgaatcgttcaagaga
aatgtgtcgaacgtattaattttgcagttgaaacgtgcgatgtcttcgttagatattttc
attgaaacggaatcgatacgattatcgtcgtcttcaaacgaagttaaagctgaaaagaca
ttcttaaatgtatttcgaggaagagcacgatcacgtccatacaaagtcattcagaatggt
ggttctgttatttatactcaaatataa
DBGET
integrated database retrieval system
