Contarinia nasturtii (swede midge): 116340265
Help
Entry
116340265 CDS
T08003
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116340265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116340265
03041 Spliceosome [BR:
cns03041
]
116340265
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116340265
Spliceosome [BR:
cns03041
]
Complex B
Other components
Prp19-related factors
116340265
Complex C
116340265
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
Mad3_BUB1_I
TPR_12
TPR_15
TPR_10
ARM_TT21
PPR
TPR_7
SPK
ARM_TT21_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
116340265
NCBI-ProteinID:
XP_031622525
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MSNNSEAQAMDVDFHQEDIAYEEEILRNAFSVKHWLRYVEHKKNSPSFGVNIVFERALKE
LPGSYKLWFNYLRTRRKQVRGRPINDPLIEEVNNAFERSLVFMHKMPRIWMDYCSFMVNQ
CKITRTRHVFDRALRALPITQHHRVWPLYLNFLKKFDIPETAVRVYRRYLKLYPEDNEEY
IEYLTKVGRLDEAAQQLASVVDNEHFVSKHGKSNHQLWNELCELISKNPDKVHSLNIDAI
IRGGLRRYTDQLGHLWTSLANYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKKMEDLASDTNPSEDDEIDVDLRMARFEHLMDRRLLLLNSVLLRQNPHNVPEWHK
RVQLYEGNLLEIIATYTEAVQTVQPKLAVGKLHTLWVEFAKFYEKNDQIDDARIVFEKGT
QVEYIKVDELAAVWCEWAEMEVRQEQYENALKLMQRATAMPKRKVAYHDEKESVQMRLYK
SLKLWATYADFEESFGTFKTCKAVYDRIIDLKICTPQIIINYGMFLEENNYFEEAFRSYE
KGIALFKWPNVYDIWNMYLTKFLARYGGTKLERLRDLFEQCLENCPPELCKCFYLLYAKL
EEEHGLARHAMAVYERATTAVKDTEMADMFNIYIKKAAEIYGLPRTRQIFEKAIEVLPED
KSREMCVRFAEMETKLGEIDRARAIYAHCSQMCDPRITEHFWQTWKEFEIKHGNEDTMRE
MLRIRRSIQATYNTQVNMMAAQMMATTTPVSETPKDGMRLLEAKAMETQVQPTKTANSNI
MFVRGETTGLAEKDKVVNPDEIDIDDDDEEDEDEEEEGENNDETNGSDVETKVIKNIEKQ
AIPDKVFGSLKRKHDKSDEDD
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaatagcgaagcgcaagcgatggacgttgattttcatcaagaagatatcgca
tatgaggaggaaattttacggaatgcattttcagtaaaacattggctacgatatgtcgaa
cacaagaagaattcaccgtcgtttggtgtgaacattgtgttcgaacgtgcattaaaagag
ttaccgggatcgtataaattatggtttaattatttacgaacgagacgcaagcaagttcgt
ggccgaccaataaacgatccactgattgaagaagtaaacaatgcattcgaacgttcactg
gtgtttatgcataaaatgccacgcatttggatggattattgttcatttatggtgaatcaa
tgcaaaataacacgaacgcgtcatgtatttgaccgtgcactccgtgcccttccaatcaca
caacatcaccgtgtttggccgctgtatttgaattttttgaagaaattcgatataccggag
acggccgtacgtgtttatcgacgatatttgaaactttatccagaagacaatgaagaatat
atcgaatatttgacgaaagtcggtcgattagatgaggctgcacagcaattggcatcagtg
gttgacaatgaacatttcgtatcgaaacatggcaaatcaaatcatcaactttggaacgag
ttgtgcgaattaatatcgaaaaatccggataaagttcattcgttgaatattgatgcgatt
attcgtggtggattgcgtcgttataccgatcaattgggtcacctgtggacatcgttggcc
aattactatgtgcgaagcggtttattcgatcgtgcgcgtgacatttatgaagaggccatt
caaacggtgacaactgttcgtgattttacccaagtgttcgatgcatacgctcaatttgaa
gagttgagtttgagtaagaaaatggaagatttggcatccgatacaaatccaagtgaagac
gatgaaattgatgttgatctgcgaatggcacgttttgagcatcttatggatcgtcgtttg
ttattgcttaacagtgtgctgttacgtcaaaatccgcacaatgtacccgaatggcataag
cgggttcaattgtacgaaggtaatttacttgaaatcattgcaacatacaccgaagccgtt
caaaccgttcaaccaaaattggccgttggaaaattgcacacattatgggttgaatttgca
aaattctatgagaaaaatgaccaaatcgatgatgcacgtattgtatttgaaaagggcact
caagttgagtatatcaaagtcgatgaattggcagccgtttggtgtgaatgggccgaaatg
gaagtgcgacaagaacaatatgaaaatgcgttgaaattaatgcaacgcgcaacagcgatg
ccaaaacgaaaggttgcttatcacgatgaaaaggaatcggttcaaatgcgtctgtataaa
tcgcttaaattatgggcaacatatgcggatttcgaagagagttttggcacattcaaaaca
tgcaaagccgtttacgatagaattatcgatttgaaaatctgcacaccacaaattatcatc
aattatggcatgtttttagaggaaaataattattttgaagaagcattccggtcatacgaa
aaaggcattgctctattcaaatggccaaatgtgtacgacatatggaatatgtatctaaca
aaatttttggcacgttatggtggcaccaaattggaacgtctacgtgatttattcgaacaa
tgtttggaaaattgtccacccgaattgtgtaaatgtttctatttgttgtatgctaaattg
gaagaagagcatggattggcccggcatgcaatggccgtgtatgaacgagctacaacagcg
gttaaagacaccgaaatggccgatatgtttaatatttatattaagaaagcagccgaaatt
tatggtttaccacgaacacggcaaatatttgaaaaggccatcgaagtcttacccgaagat
aagtcacgtgaaatgtgtgtacgattcgctgaaatggaaacaaaactcggtgaaattgat
cgagcgcgtgccatttatgcgcattgcagccaaatgtgtgatccacgcatcaccgaacac
ttctggcaaacgtggaaagaattcgaaatcaaacatggaaacgaggatacaatgcgtgaa
atgttacgtatacggcgcagcattcaagcaacgtataatacacaagtgaatatgatggcc
gcgcaaatgatggccactacaacaccggtcagtgaaacgcccaaagatggtatgcgcctt
ttggaggccaaagcaatggaaactcaagtccaaccaaccaaaacagccaacagtaatatc
atgtttgtgcgaggcgaaaccaccggactcgctgaaaaagataaagtcgttaatcccgat
gaaattgacatcgatgacgatgatgaggaagacgaagacgaagaagaggaaggtgaaaat
aatgatgaaaccaacggttccgatgtcgaaactaaagtcattaaaaacatcgaaaaacaa
gctatacccgataaagtgtttggcagtttaaagagaaaacatgataaaagcgatgaagat
gattga
DBGET
integrated database retrieval system
