KEGG   Contarinia nasturtii (swede midge): 116340494
Entry
116340494         CDS       T08003                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
cns  Contarinia nasturtii (swede midge)
Pathway
cns03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cns00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116340494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cns03019]
    116340494
Messenger RNA biogenesis [BR:cns03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     116340494
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     116340494
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 116340494
NCBI-ProteinID: XP_031622891
LinkDB
Position
Unknown
AA seq 299 aa
MANILISDAEKTFILHGVEDNLRCDGRTRCDYRPMEIETAIVTHANGSCRLRLANTDVLV
AVKSEIDIPPLENPDEGKIVFFVDCSANAAPEFEGRGGEELAMEFSNTLESAYRSRQAFN
LKNLCILPQQRCWKLYVDVLILECGGNLYDAVSLAVKGALFNTRLPKVTAALMDGGNVDL
ALSEDPYDCVRLQVESIPILVTICKIGEHCVVDPSAEEEVCSSASLVVGVSVREENAYIT
NMRTSGAGSFHMETLNKCLELGKSAGQCLDRVLLRVLREEEQKIGNRPIGQTEIFGFLR
NT seq 900 nt   +upstreamnt  +downstreamnt
atggcaaatattttgataagtgatgctgagaaaacgttcattttacatggtgtcgaagat
aatttacgttgtgatggtcgaacccgttgtgattaccgtcccatggaaattgaaacggcc
attgttacacatgcaaatggatcatgccggttgagattggcaaataccgatgttttggtc
gccgttaaatctgaaatcgatattccaccattggagaatccagacgaaggaaaaattgtg
ttctttgttgattgttcagcaaacgcagcaccagaatttgaaggccgtggcggtgaagaa
ttggcgatggaattttcaaatacactcgaaagtgcatatcgctcaagacaggcattcaat
ttgaaaaatctttgtattctgccacaacaacgatgctggaaactctatgttgatgtgctg
attttagaatgtggtggaaatctatacgatgcagtctcgctagcagttaagggagcctta
tttaatacacgattaccgaaagtcactgcagcacttatggatggtggcaatgtggatttg
gctctttctgaagatccatacgactgtgttcgattgcaagtggaatcgattccaattttg
gtgacaatttgtaaaattggcgaacattgcgtcgttgatccatcggctgaagaagaagta
tgcagttcggccagtttggtggttggggtctcagtacgcgaagagaatgcttacattaca
aatatgcgaacaagtggtgctggttcattccatatggaaacattaaataagtgtcttgag
ctaggaaagtcagctggacaatgtttggatcgagtattattgcgagtgcttcgtgaagag
gaacaaaaaatcggcaatcgaccgattggccaaaccgaaattttcggctttctccgataa

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