Contarinia nasturtii (swede midge): 116340931
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Entry
116340931 CDS
T08003
Name
(RefSeq) HEAT repeat-containing protein 1 homolog
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116340931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cns03009
]
116340931
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
116340931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_HEATR1
BP28CT
U3snoRNP10
HEAT_EF3_N
CEP104-like_TOG
Phage_term_smal
IFRD
MRP-S28
Motif
Other DBs
NCBI-GeneID:
116340931
NCBI-ProteinID:
XP_031623550
LinkDB
All DBs
Position
Unknown
AA seq
2117 aa
AA seq
DB search
MSTSLAEQLRRLKTPQTTLLVDSKKRASILFNPKEAAEKDRETIFDIGYSGFEELIKLNP
AFLQFESSLFDKNAREFQRAVENKDINRQLKEVIKKFLIHLSPYLLLQPSHKCLEWLIRR
FNINLYEKSEFMMLILPYHETTIFVKCLQTMNVSDVNDLWHWLEPVKKNGVPLSKQALLN
RVGSDNFLMSFICESIVYAVNELDTRSHTLQVYYAFFCTSIIGALDAVKINESHITNIYG
AIRKGIKSTSIDFCAASLMIIGQLVNKVKLKREILESFVNMLLERVSHAKLQQDVIILLV
LIYRNQSETIGDISQECLTKLLVNTKWLPPVLAKIYTENVNILPFYLPLLSACLKHVQLK
SGSWKKCRKFCDALLSEIFFKPEHAESVIRCTLDSFILTEKVDDTIIEIESGNEDEDMEG
TDKGITTWYTNTLKALERRYPTTFDAIVKEIVRSDNKSMSELKKRSLKKVLSFLFTIVCA
DDNVNLFEKLYHYNAQQRVEAIKYLVKNLSKMSFSDDSKSLLKGSIAERLSDDSPLVVKE
ALKFNNSALLRFMNKAELIKKYVSILEQTLKKPKVWEDTALEAVKHLGDLCSKNFPIEIL
VAILPLLLQPSELSVGFLRKIFISDLANHVELIKACKDATAGTGDNKEAMTSAILRVFES
KKGLPQIGHILNFIKSTSDEDLSLNKAFYAMLLLFHSFNVEKPNPLHLPEILNVIERFEK
QFKMGNSDSAKWPSSVAKGRYPVNIHIAFIKKIIDTQAKIVQDQFKGKFIEFSKPMTNLS
LLRQIFEYFIAQMSRRQSKYALFEDGLKHFIAKLFDDPQKCIEYLSNYYTIDVLYPEPNN
LAPSTISIEHQVFIINYVNSLIQTEDGVLHGVQVQLQPFVRIINALRSPNSEVREAAYDT
FVILKSTDQPKFKTLISKLVRRQSEILMDDNQLPLILFKIFDKKPSTDLTNNLMEFMEYI
ATSNDNEFLVAHLLEALTHVNSEEILKSIVNIAMDILTAANEEMEKTAKKVLCLDHFKST
IIRNILSRYTQQTIKLIKKLSCPWQVLLKAAESYGVLLKGKSKETPVTHVIVDVFNDDLF
NELSEANQRQFIAALVNSATYAENAGLYTNISKFFKQIQLNGRICVEILDEMAKTDQFER
MEVDEVPATTRQRRSSQCASDGGASAELLKMKSWKRGVTWLEFLQNKKNINDPHRMIPSL
FAVLQKCLQFEDQSNVEYVKQLSLACLYHLCVIIAPEGKVQSNLISEKNFKIEPVVQCIR
GTQNPQTHHHALQLLSHSAKMLPEQVLHNMMDIFTFMGSSVVRHDDVYSFQIITNIISSI
IPTLTRVNENKSEAERNELVIPVLKVFSDIILDVPEHRRLPLYNKLLDTLNADNYLWMFL
TILIENYITHHQPEVEKTIRQPSTLAVELPQRIEIALALAKEFDARTIIVTATKMIGFLQ
KMPVNKPTNESEKIPAEISALFNINAWSKRQFRHFKYETLKVINTLTSSVDFVNKVAVLS
DDEAASIKEHYQNAIINVLTYIPIISKATEAENSHADYWKALLHNCFDILENVISLLSSN
VLLVVVHGLLSHKLSSVRRRVIELLINKLQHNPEIFSKENAKDLVSLLEPLTKIIESIID
EKKLMQNASSIENTAIQQMALMAVKLLSKQLAEKHPKDFKYIVETLIDILRKSEKVPRIL
LATVLLCLCEICANLRVHSIAYLPSFMKIFLEILKGYTKPENVCNDGSVLIYFVTGLLKI
VGTLALYMSPYLVEMIVRLSQIWWNIETEATKDPKRSFVIDRLNGIWEKLSTTLELRILI
PSIDQSYKRLVNDEQSIAIGPLMLLLTQTFEQQAAGNISRFMPDITSFFITALQFRSDHA
DIELATLNKLEDKIVKSFGALTLKLSEGSFRPLYYRIYDWAIKQNNKDLDHTITYFRLSI
EIANSLKSLFVLFANDFIDDIPELLNKSLASEFTKPSDVLVAKTSLLIEGVIETLYQVFL
HDSRGFINGARFEAILQPLVDQIENQFVLDSPKLMNLVSLALAQLGQAVNDDIQWKQLNY
QILMKTRNNESRIRLFALKVGVALAAKLGEDYMPLLPETVPFISELLEDENPEVEKQCQL
SVQELEKILGEPLQKYF
NT seq
6354 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatctttagcggaacaattgcgtcgtttgaaaacgcctcaaacgactttgttg
gttgatagcaaaaaacgtgcatcgattttgttcaatccaaaggaagcggctgaaaaggat
cgtgaaactattttcgatattggttacagtggttttgaagagttaatcaaattgaatccg
gcctttttgcaatttgaatcgtcacttttcgataaaaatgcacgtgaatttcaacgagcc
gtagaaaacaaggacataaaccgtcaattgaaagaagtgattaagaaatttctcattcat
ttatcgccttatttgctgttgcaaccttcacataaatgcttggaatggttaattcgtcgt
ttcaacatcaatttatatgaaaagagtgaatttatgatgttgattttaccatatcatgaa
acgacaatttttgtgaaatgtcttcaaacaatgaatgtaagcgatgtaaatgatttatgg
cattggttggagccggtgaagaaaaacggagttccgttatcaaaacaagcactgttgaat
cgagtgggcagcgataattttcttatgtcgttcatttgcgaatcgattgtttatgcggtg
aatgagcttgacacacggtcacacacgctacaagtatactatgcattcttctgcacatcg
atcattggcgcattggatgctgttaaaatcaatgaatcacacattacaaacatttatgga
gccatccgaaagggtatcaaatcaacgtcgatcgacttttgtgctgcttctctcatgatt
atcggacaattggtgaataaagtgaagctaaaacgcgaaatattggaatcattcgttaat
atgctgcttgaacgagtatcgcacgctaaattgcaacaggatgtcatcattttgctggtg
cttatttatcgcaatcagagcgaaactattggagatatttcccaagaatgtctcaccaaa
ttactagtgaataccaagtggttaccaccagttttggcgaagatttacaccgagaacgtc
aatattttaccattttacttgccacttctgtcggcttgtctcaagcacgttcagttaaaa
tcaggcagttggaagaaatgtcgtaaattctgcgatgcactgctttcggagattttcttt
aaaccagaacatgctgaaagtgtcattcgctgcacgttggactcgtttattttaactgaa
aaagttgacgacaccatcattgaaatcgaatcgggcaacgaagatgaggatatggaaggg
actgataaaggtatcaccacctggtataccaacacattaaaggcacttgaacgtcgctat
ccaaccacattcgatgcgattgtaaaagagatcgttcgatcagacaacaaatcgatgagt
gaactgaaaaagcgttcactaaagaaggtattgagcttcttgttcaccatcgtttgtgcc
gatgacaatgtgaatctattcgaaaagttataccattacaatgctcagcaacgtgttgaa
gccataaaatacttggtgaaaaacttgagcaaaatgagtttttcagacgatagtaagagt
ttgctgaagggcagcattgcggaacgtcttagcgatgattctccattggttgtaaaagaa
gcgcttaaattcaacaattcggctttgcttcggttcatgaataaagctgaactcattaag
aaatacgtaagcattttggagcaaacactaaaaaagccaaaagtatgggaagataccgca
ttggaggcagtcaagcacttgggtgacctatgctcaaaaaatttccccattgagattttg
gtggcaattttaccgttgttattacaaccatcggaacttagtgttggatttttgcgtaag
attttcatttctgatttggcaaatcatgtagaattgattaaagcatgcaaagatgcaacg
gcgggcactggcgataataaggaagctatgacatcggccatcttgagagtatttgagtcg
aaaaaaggtctaccgcaaattggacacattttgaatttcattaaatcaaccagtgacgag
gatctatcgctgaacaaagcattctatgctatgctattgctcttccattcatttaacgtc
gagaaaccgaatccattgcatttgccggaaattttgaatgtaatcgaacgatttgaaaag
caatttaaaatgggaaactcagacagtgccaaatggccaagttcggtggctaaaggacgg
tatcctgtaaatattcatattgcgttcatcaaaaaaatcattgacacacaagcgaaaatt
gtacaagaccaattcaaaggtaaatttattgaattcagcaaaccaatgaccaatttatct
ttgttgcgtcaaatttttgaatattttattgcgcaaatgagtcgccgtcagtcgaaatac
gcattgtttgaggatggtttgaaacattttatcgcaaaattatttgacgatccgcaaaaa
tgcattgaatatctgtcaaattactatacaatcgatgtattatatccggaaccaaacaat
ttggcacccagcaccatttcgattgaacatcaagtgttcatcatcaactatgtgaattca
ctcattcaaaccgaagatggcgttcttcatggtgttcaagttcaattgcaaccatttgtt
cgtatcataaatgcacttcgatcaccgaatagtgaggttagagaggcagcctacgacaca
tttgtcattctcaaatcaaccgatcagccgaaattcaagactttgatttcaaaacttgtt
cgacgtcaaagtgaaattttaatggatgacaatcaattgccgctgattttattcaagatt
ttcgataagaaaccatcaaccgaccttaccaataatctaatggaatttatggaatacatt
gcaacgtctaatgacaatgaatttttggtggctcatctcttggaggcacttacccatgtc
aatagcgaagaaattctcaaatccattgtcaatattgccatggatattttgacagctgcc
aatgaagagatggagaaaacggcaaagaaagttctctgcttggatcacttcaaatcgacc
attattcgaaatattctatcacgttacactcaacaaacgattaaactcatcaaaaaattg
tcatgtccatggcaagttttgcttaaggcggccgaatcgtatggtgtattgttaaaggga
aaatcaaaagagacaccagtcacacacgttattgtagacgtattcaatgatgatctgttc
aacgaattgtctgaggcaaatcaacgtcaattcattgctgcattagttaacagcgctaca
tatgctgaaaacgctggattgtacacaaatattagcaaatttttcaagcaaattcaattg
aatggccgcatttgtgtggaaattcttgacgaaatggccaaaacagatcaatttgaacga
atggaagtggatgaagtgccggcaacgacacgacaacgtcgtagttcacagtgtgccagt
gatggtggtgcttcggccgaactattgaaaatgaaatcatggaaaagaggcgttacatgg
ctagaatttttacaaaataaaaagaatattaatgatccacaccgtatgattccatcgttg
tttgccgtactacaaaagtgtcttcaatttgaagatcaatcgaatgtggaatatgtgaaa
caactatcattggcctgcctctatcatctgtgcgtcatcattgctccagagggtaaagtt
caaagcaatttgatttcggagaaaaacttcaaaatcgaaccggtcgttcagtgcattcga
ggcacacaaaatccacaaacacatcaccatgcactgcaattgctgtcgcattcagcaaaa
atgttgccggaacaagttctgcataatatgatggacattttcaccttcatgggttcgtct
gtggttcgtcatgacgatgtctacagtttccaaataatcacgaatatcatttcatcgatt
attccaacattaacacgagtgaatgaaaataaatccgaggctgaacgcaatgagcttgta
attccagtgttgaaggtattttccgatatcattctcgacgtgcccgagcatcgtcgcctg
ccactatacaataaactcttggacactctgaatgctgacaattatctctggatgttctta
acaattctgatcgagaactacataacgcatcatcaaccagaagttgagaaaacaattcgt
cagccatctacattggccgttgaattgccacaacgaattgaaattgcattggctttggcc
aaagagttcgatgcaagaaccatcatagtgacagcaacaaaaatgattggcttcctacag
aagatgccagtcaataagccaacgaatgaatcggaaaaaatacccgccgaaatatcagca
ctgttcaatataaatgcatggtcaaagagacaattccgtcatttcaaatacgaaacgctt
aaagtcataaacacactaacatcgtccgttgattttgtaaataaagtggctgtactgagt
gacgatgaagctgcaagcataaaggaacactatcaaaatgcaataatcaacgttttaaca
tacattccaatcatatcgaaagcaaccgaagctgaaaattcacatgcagactattggaag
gcactgcttcataattgctttgacattttggaaaatgttatctcgttgctatcatcaaat
gtgctattggtggttgttcacggattgctgtcgcataaattgtccagcgtacgacgtcga
gtcattgaactattgataaacaagttacaacacaatccagagatattcagcaaggaaaat
gcaaaagatttggtttcattgttggaaccactcacgaaaatcattgagtcaatcatcgat
gagaaaaaacttatgcaaaatgcatcatccattgaaaatacggccattcaacaaatggca
ctgatggctgtaaaactacttagcaaacaattggctgaaaagcatccaaaagatttcaag
tatattgttgagactctcatcgatattttgcgcaaaagtgaaaaagtgccacgtatctta
ttggccaccgttttgttgtgtctatgtgagatttgtgccaatcttcgtgtgcattcgatt
gcatatttaccaagttttatgaaaattttcttggaaatattgaagggatacacgaaaccg
gaaaatgtttgcaatgacggtagtgtattgatttatttcgtgactggtttattaaaaatt
gtcggaacattggccctatacatgagcccatatcttgtcgaaatgatagttcgactatca
caaatttggtggaatatcgaaaccgaggcaaccaaagatccgaaacgttcatttgttatc
gatcgattgaatggcatttgggagaaattgtcaacaacattggaattgcgtattttaatt
ccaagcattgaccagagttacaagcgtttggtgaacgatgagcaaagtattgcgattgga
ccgttgatgttgcttctaacacaaacatttgaacaacaagcagctggaaatatttcacgt
ttcatgccggacataacgtcattcttcattacagcacttcaattccgttccgatcatgcc
gacatcgaattggccactttgaataaacttgaagataaaattgtcaaatccttcggtgca
ttgacattgaaattgtctgaaggaagcttccgaccgttgtattatcgcatctacgattgg
gccataaaacaaaataacaaagatcttgaccataccatcacatacttccgattgtccatc
gaaattgctaattcgctgaaatctttgtttgtgctctttgcaaatgatttcatcgacgac
attcctgaactgctgaacaaatcattggcttcggaattcacaaaaccaagcgatgttctc
gttgccaaaacaagccttttgatcgaaggtgttatagagacactttatcaagtatttttg
catgatagtcgtggttttataaatggagctcgttttgaagcaatacttcaaccgctggtc
gatcaaatcgagaaccaatttgttctggattcaccgaaattgatgaacttggtttcatta
gcattggcacaacttggacaggctgtcaacgatgatattcaatggaaacaattgaactat
caaatcttgatgaagacgagaaataacgaatcacgcatacgactcttcgccttgaaagtt
ggtgtggctttggcagccaaacttggagaagactatatgccactgctaccggaaaccgtg
ccattcatatctgagctattggaagatgaaaatccggaggtggaaaaacaatgtcaattg
agtgtacaagaactcgaaaaaattcttggcgaaccactacaaaaatacttttaa
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integrated database retrieval system
