Contarinia nasturtii (swede midge): 116341531
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Entry
116341531 CDS
T08003
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116341531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116341531
03036 Chromosome and associated proteins [BR:
cns03036
]
116341531
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116341531
Chromosome and associated proteins [BR:
cns03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116341531
PBAF complex
116341531
GBAF(ncBAF) complex
116341531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
PI3K_1B_p101
Motif
Other DBs
NCBI-GeneID:
116341531
NCBI-ProteinID:
XP_031624505
LinkDB
All DBs
Position
Unknown
AA seq
1147 aa
AA seq
DB search
MALLGPKKDGGPNADYFQSPESMQGFEQVRQWLTKNCKKYVQSDPPTKESLSQLLISFIQ
FQETRFGKGASEPPTMRLPMRCFLDFKPGGSLCHIFSNMYRYKADQRWRKFEFNVTKTAR
KDKDPNIQMATEILENLIDQECFRLPTAYIRPEVEEELREQITEILKERQCEITEDEDQA
SHIIYPELDPLPDDYARPSFKRGKNVMIHWYYLPESYDSWVANTFELPEDVPESINTPSN
TWRVTAQWVLHSQEYNEWMAEEDYEVDESGKKVMHRHRLTVDDLLQNDEKRTVKVAGKQK
RKRSPSPPAKGVGKRKSGRSPAVVQKKARGNLEIEDEEDLTRDMDDPQPETNITEVITKP
STNSPATQSNSKQRGIDSDMLPLKGSVVADLDEEAERSGGSGTQNNVSGGGEDSQTGKTS
ENSNTQEFPSNRDDLEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNAKNKSKT
PEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQIDVDA
RPSPMGPPPTSHFHVLSDTPSGLQPLNPPKTTQPSAAKTLFDLDKVKKEKEVQVTVDGQI
ASAAPASVASSIAVNAAPVAGIAPPSAAAIAVGQVPIKPEISIEPGAHFGLRMDQYAKKP
IAMRNKNAASMAREWTEQETFQLLEGLELFRDDWNKICEHVGTRTQDECILHFLRLPIED
PYLEDDCGFLGPLAYQPIPFSKSGNPIMSTVAFLSSIVDPRIAAAAAKAAMEEFALIKEE
VPPNVYYAHYKNVEKSIVNGRFDPTAGLANSGIAGTAPEKEDEENKNNDEEMKDVSKKDG
DKEKESGEKEKDCKNTDKEKENEKETDKDKESEKPAIDENKSNDSSSTNVPANESNKMDT
SDKSGDAKTNEMAIENGATVNGSDKDSDETHKLFNETDLQRAAAAALASAAVKAKHMSAL
EERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQL
KAAEFRARQNAQHRLQQEQQGQWQPPANANATNVPPVTHPLHPNVNGPHIPPSIPIPQQP
INPSPVNAVPPTTQPSEAPQPIPAQQQPQTVSVAPSQNVTVPTEQPASAPTAEAPPPAAA
AATPTPI
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggcacttttaggaccgaaaaaggatggaggtccaaatgcggactattttcaatcaccc
gaatcgatgcaaggatttgagcaagtgcgacaatggcttacgaaaaattgtaaaaagtac
gtacaatcagatccaccgacaaaggagtcattgtcacaattgttgatttcgttcatccaa
tttcaagagacacgattcggaaaaggtgcatcagaaccaccgacaatgcgtttaccgatg
cgatgttttttggatttcaagcccggtggcagtttgtgtcacatattttcgaatatgtat
cgctacaaagccgatcaacgttggagaaaattcgaatttaatgtgacgaaaacagcgcgc
aaagataaagatccgaacattcaaatggcgacagaaattttggaaaatcttattgatcaa
gaatgtttccgtttgccaactgcatacattcgacctgaagtcgaagaagaattacgcgag
caaataactgagatactgaaagagcgccaatgtgaaatcactgaagatgaagatcaggca
tcgcatatcatttatcccgaattggatccattaccagacgattatgctagaccatcgttt
aaacgcggaaaaaacgtcatgattcattggtattatttaccagaatcatatgattcatgg
gtggcaaacacatttgaattgccggaagatgttcctgagtctatcaatacaccatcaaac
acttggcgtgtaaccgctcaatgggtattgcattcacaagagtacaatgaatggatggca
gaagaagattatgaggtggacgaaagtggtaagaaagtgatgcatcgtcacagactaacc
gtggacgatttattgcaaaacgatgagaaacgcacggttaaagtagcaggaaagcaaaag
cgaaaacgatcaccatcaccaccagcaaaaggtgtgggcaaacgtaaatctggtcgttct
ccagccgtcgttcaaaagaaagcacgtggtaatctcgaaattgaagatgaagaggattta
acacgggacatggatgatccacaaccagagacaaatatcacggaagtgattacaaaacca
tcgacaaacagtccagccacacaatcgaatagtaaacaacgtggtattgacagtgacatg
ctaccactgaaaggaagtgtggttgctgatttggatgaagaggccgaaagaagtggtggt
tcaggtactcaaaacaatgtgagcggcggtggagaagactctcaaaccggtaagacaagc
gaaaatagtaacactcaagagtttccaagcaatcgtgatgatttggaagacaatgttacc
gaacaaactcatcacatcattgtgccatcgtattcggcatggtttgactacaattccatt
catgtcattgaaaagcgagcaatgccagaatttttcaacgccaaaaataaatcgaaaaca
ccggaaatttatatggcttatcgaaacttcatgattgacacataccgtttgaatccaacg
gaatacttaacaagcacagcatgtcgtcgtaatttggccggtgatgtgtgcgctattatg
cgagtgcatgcattcttggagcaatggggtttggttaactatcaaattgacgttgatgca
cgtccatcgccaatgggaccaccgcccacatcacatttccatgtgctaagcgacacacca
tccggtttacaaccattgaatccaccgaaaacaactcaaccatcagcggccaaaacatta
ttcgatttggacaaagttaaaaaagagaaggaagtacaagtcaccgttgatggacaaatt
gcttcggctgcaccagcatcggtagcatcgagcattgctgtaaatgcagcacctgtggcc
ggtatagcgccaccaagtgcggccgccatcgctgtcggtcaggtaccaataaaaccagag
atttccattgaaccgggcgcacatttcggcttacgaatggatcagtatgcaaagaaaccg
atcgcaatgcgaaacaaaaatgctgccagtatggcacgcgaatggaccgaacaagaaaca
tttcaattgcttgaaggattggaactctttcgcgatgactggaataagatttgcgaacat
gtcggtacacgcacacaagatgaatgtattttacactttttgagattgccaatcgaagat
ccataccttgaggatgattgtggtttccttggaccgcttgcctatcaacccattccattc
agcaaatcgggcaatccaattatgtcgactgtcgcatttttatcatcgattgttgatcca
agaattgcagctgccgctgccaaagcggccatggaagaatttgcattgattaaggaggaa
gttccaccaaacgtttactatgctcactataaaaatgtcgaaaaatcaatagtcaatgga
agatttgatccgaccgcgggactggcaaacagtggaattgctggtacagcaccggaaaag
gaagacgaagagaacaaaaataatgacgaagaaatgaaagatgtttcaaagaaggacggc
gataaagagaaagagagtggtgaaaaagaaaaagattgtaaaaacactgataaggaaaaa
gagaatgaaaaagagacggataaagataaagagtcggaaaaaccggctatcgatgagaat
aaatcgaatgattcttcttctactaatgttccagcaaatgaatcaaataaaatggataca
tcagataagtcaggcgatgccaaaaccaacgaaatggccatcgaaaatggagcaacagtg
aatggaagtgacaaagattcagacgaaacccataaactattcaacgaaaccgatttacag
cgtgccgctgcggccgctctcgcatcagccgctgttaaagcaaaacacatgtcagcactt
gaagagcgtaaaattaagagtttggttgcattactggtggaaacacaaatgaagaaactc
gaaatcaaattgcgccactttgaagaattggaaacaacgatggaaagagaaagagaaggt
ctcgaatatcaacgacaacaattgattacagagcgccaacaattccatttggaacaattg
aaagcggccgaatttcgggcacgacaaaatgcacagcatcgattacaacaagagcaacag
ggacaatggcaaccaccagcaaatgcaaatgctaccaatgttccgccagtaacgcatcca
ttacatccgaatgtgaatggaccacatattccaccgtctataccaattccacagcaacca
atcaatccaagcccagtgaacgcagttccaccgacaacgcaacctagtgaagcacctcag
ccaattccagcacaacaacagccacaaacggtatccgtagcaccgtcacaaaatgtaaca
gtacccacagaacaaccagcaagtgctccgacagcggaagcaccaccgccggcagcagca
gcagccaccccgacacctatttga
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