Contarinia nasturtii (swede midge): 116341803
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Entry
116341803 CDS
T08003
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116341803
Spliceosome [BR:
cns03041
]
Common components
Common spliceosomal components
General mRNP proteins
116341803
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
116341803
NCBI-ProteinID:
XP_031624961
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MAEDFDIEALLEAPYNRIVDKPATASIENSRERTESRSSESSVSISISSKGSKVSEIGSR
KRRWSSTESIASTSSSSSSSSSSLRCSEQASECSSSERRMFSPAYYRRSIERTYYKPNYC
PWSRNSSSERDSTIENTTEKRSYKQSEDVNNTDKSSPIHVSSNGKKRENGKHRSRSRSRS
KDKERDRERKRSDRDKEKKSSRRSRSRDKKRSRSKERKRSRSRSKDKKRSKSRERKVRSK
SKELEKSPDRSRDRHRSDRERVERERERERSERDRPERERPERERPDRERSERDRPGRER
PERERPEKDRPEKDRPEKDRPEKDRSDRDRPDKDRPEKDRPEKDRSDRDRLERDRERPEK
DRKRDRSRSKEHRRRRSSRSPDRRFRRGRTPPNSASRAYSRSDDEIDLEERDARTIFCMQ
LSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFKNSESVALALGLNGQKLL
GIPISVQHTQAEKNRIQNAPPVPQPQKNPSGPMRLYVGSLHFNITEDMLRGIFEPFGKID
SIQLIMDSETGRSKGYGFITFHNAEDAKKALEQLNGFELAGRPMKVGNVTERLDVNTTAS
LDTDEMDRSGIDLGVTGRLQLMFKLAEGAGLDVPQAAANALLATAPQPQIQPQIAPPIAT
QCFLLSNMFDPITETNPLWDIEIRDEVVEECQKHGGILHVYVDKASQGNVYVKCPSIATA
VLAVNALHGRWFAGRVITAAYVPLLNYHALFPDAATAANLLQTSAKE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggatttcgacatcgaggcattgctagaggcaccgtacaatagaattgttgat
aaaccagcaactgcatcgatcgaaaacagccgagaacgaactgagtcacgaagcagtgag
agtagcgttagtatatccattagttcaaagggcagtaaagtaagtgaaattggcagtcgt
aagagacgatggagttcaactgaatcgattgcttccacttcctcgtcgtcctcatcgtca
tcgtctagtttgagatgttctgaacaagcaagtgaatgctcttcgagcgaacgacgcatg
tttagtccggcttattatagacgttcaattgaaagaacctattacaaaccaaactattgc
ccatggtctcgtaactcatcaagcgaacgagatagtaccattgaaaataccacagaaaaa
agatcatacaaacaatctgaggatgtcaacaacactgataaatcgtcgccgatccatgtt
tcgagcaacggaaagaagcgggaaaatggaaaacatcgatccagaagccggtctcggtca
aaggacaaggaacgggatcgtgaaagaaaacgttcagatcgggacaaagaaaaaaagtcg
tcaagaagaagtcgatcacgtgataaaaagcgttcaagatccaaagagcgtaaacgcagt
cgatcacgcagcaaagataagaaacgaagcaaatcacgcgaaagaaaagttcgctccaaa
tcaaaagagcttgaaaagtctcctgacagatcacgcgacagacatcgatcggatagagag
cgtgtggaaagagagcgagaaagagagagatctgagagagatcgtcctgagcgagaacgc
ccagagagagaacgtccggaccgagaacgctcagagagagatcgtccgggtcgagagcgc
ccagagagagaacgcccagaaaaagatcgaccagaaaaagatcgaccagaaaaagatcga
ccagaaaaagatcgctcagatagagatcgtccagataaagatcgcccagaaaaagatcga
ccagaaaaagatcgctcagatagagaccgtttggagcgagaccgcgaaagaccggaaaaa
gatcgaaaaagagatcgatcacggagtaaagagcatcgacgtcgtcgatcatcccgatca
ccagatcgacgattcagacgcggtcggacaccgccaaattcagcaagtcgtgcttattct
cgttctgatgacgagattgatctggaagaacgtgatgctcgtacaatattctgtatgcaa
ttatcgcaacgagttcgggctcgtgatttagaagagtttttctctagcgttggcaaagta
cgtgatgttcgtctaatcacgtgcaataaaacaaaacgtttcaaaggaattgcatatatc
gaattcaaaaattccgaatcggtggcattggcacttggtttgaatggtcaaaaattgctt
ggtattccgattagtgtgcaacacacgcaagcggaaaagaatcgaattcaaaatgcacca
ccagtcccacaaccacagaagaatccatcgggaccaatgcgactgtatgtcggctcatta
cattttaacataaccgaagatatgctgcgtggcatttttgagccattcggtaaaattgat
agcattcaattgattatggattcggaaacaggtcgttcaaagggatacggtttcataacg
ttccacaatgcagaagatgcgaaaaaggcgttagaacagttgaatggatttgaattggcc
ggtcgacctatgaaagttggtaatgtaaccgaacgattggatgtgaatacaaccgcttcg
ctggatacggacgaaatggatcgttctggcatcgatttgggcgttaccggtcgtttgcaa
ttgatgtttaaattggcagaaggtgctggacttgatgtaccacaagctgccgcaaatgct
ttacttgccactgcacctcaacctcagattcaaccacaaattgcaccaccaattgcaacg
caatgctttttgctatcgaacatgtttgatccgataaccgaaacaaatccattgtgggac
attgaaatacgcgacgaagtagttgaggaatgccaaaaacacggtggcattctgcatgta
tatgttgataaagcatcacaaggaaatgtgtatgtcaagtgtccgagcatagcaacagct
gtactagctgtgaacgcacttcatggtcgatggtttgcgggacgtgttattacagccgct
tatgtaccactattgaattatcacgcactatttccagatgcagccacagccgctaatttg
cttcaaacatcggcaaaggaataa
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