Contarinia nasturtii (swede midge): 116341861
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Entry
116341861 CDS
T08003
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03013
Nucleocytoplasmic transport
cns03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116341861
03015 mRNA surveillance pathway
116341861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116341861
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116341861
mRNA cycle factors
P-body specific factors
116341861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
MutS_IV
PAXX
Motif
Other DBs
NCBI-GeneID:
116341861
NCBI-ProteinID:
XP_031625045
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MSEAATANELAAQPQGDVTADTTDDATKIDDEKKERDELENYIAELKGKIEQKTKLRNEN
LNCSRPGEEYFFKLDSSLKKNTTFVKKLKQFTTAQLDSLLKDMSTLNLTKYISEVSSALS
EAKLKLTDVSAAITLSTELHKIYADFSNAFYENWQKILSLKAGEKVQNPSKLRVDLKFFA
ELVSVGIFSNKQGLPLLGSILMSLIAQDKEDFNNLSIVLSFCRHCGEEYAGLVPKSILTL
AEKYSVELPSSTLLTSERQQNLKNLLKDYYTCLAKHLKNEHKEYQSALRLHKKILESKGE
VSTDRKEKLEALQTNYEKLLSSSQTMSDLLNEEMPDLPKDEQVQSGGVVLDMIDDSNDTQ
LDPWGDEETKSFYIDLPDLRLFLPNYAPKIQDPIVPDEPTLTEEALDMDIVPEQLEVEES
TVLAEEGGKSSTPEPILPDEATAAASSTSVSANRQQFANFLKNLVNCVNKELIDSAAIEF
LLNLNTKSNRKKLTTAIFGVKRTRLDLLPFFARLVATINLVSRDVAVDLCQKLKNEFKYH
IAKKNQMNIESKIKVVRFIGEMTKFGLYSKIEALFCLKILLHDFQHHQIEMTCAFLEVAG
QYLYNCKDSRLRTSVYLEQMMRLKTVSALDSRHVVQIENSYYLVKPPEGVATTKKIRTPM
QMYIRYLIYEELNKGNVDKIIKYMRRLNWDDKDTYDYIVKCLSKAYNIRYYNIRCLADLA
SGISSYQDKAIVRVIDTVFEDIRAGLEIHSPKLAQRRIAMAKYLGELYNYRLIESSNVLN
TLYSIISLGVTFNHEIVSEMDPPGSLFRLKLACVLLETCGQYFTSAVSRKKLDYFLIFFQ
NYYWFKKSDPIFSSIENTSDLFPILTDHYFKECILAIRPKLKLYQSYEQAKEEVSKLQQE
LYPNLFSENNETDSLGTIAEEEGNEQTDTNNDNTEDTSEALGSDDEVRQRRTDDENSPDD
YGTDAGVDAIDDDLSPSNEPDPAALPREKQRTQEDIEFEEAFDKMYVDSYQERLRESVKA
SKDIAVPMMARAGNKKTYDQIQSNENVQEKKDTVPFVLMLRGSKGGKQQQFKVFSAPTDS
ALAINLRLQEQKIREENEKVKRLTLNITERIEEEDYQESLLQNQRSPAQNRQSQQKSQKQ
QKYKHQKGAPDADLIFG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggcagctactgctaatgaattggctgcacagccacaaggtgatgtgacggca
gacactacagacgatgccaccaaaattgatgatgagaagaaggaacgagacgaattggag
aattatattgcggaattgaaaggaaaaattgaacaaaaaaccaaattgagaaatgaaaat
ctcaattgttctcgtcccggtgaagaatacttcttcaaactggattcgagtttgaagaaa
aacacgacattcgttaaaaaactcaagcaatttacaaccgcacagttggattcattgttg
aaagatatgtcaacactgaacctaaccaaatacatttcggaagtgagttcagcgcttagc
gaagccaaacttaagttgaccgatgtgagtgcagcaattacactaagcaccgaattgcat
aaaatttatgccgatttttcgaatgcattctatgaaaattggcagaagattctaagtctt
aaggccggcgaaaaagtccaaaatccaagcaaattacgtgtcgatttaaaattctttgcc
gaattggtttcggttggaatttttagcaacaagcaaggactaccattactcggttcgata
ctgatgagtttaattgctcaggacaaagaagacttcaacaatttatcgattgtgctttca
ttctgtcgtcactgtggcgaagaatatgctggattagtaccaaaatccattttgacattg
gctgagaaatactcggtggagttgccatcatcaacattgcttacatccgaacggcagcaa
aatttgaaaaatttgctcaaagactactacacttgcttggcaaagcatttgaaaaacgaa
cacaaggaatatcaatcggcactgcgactgcataagaaaattctcgaatcgaaaggtgag
gtgtcaaccgatcgtaaagagaagttggaagcattgcaaacgaactatgaaaaactttta
tcgtcatcgcaaaccatgtccgatttattgaatgaggagatgccggatttaccaaaagac
gaacaagtacaaagtggtggcgttgttcttgatatgatcgatgattcaaatgacacacaa
ttggatccatggggcgatgaagagacgaaaagtttctacattgatttgcccgatctaaga
ttgtttctaccaaattatgcacccaaaatccaagatccgattgtgcccgatgagccgaca
ttaaccgaagaagcgttggacatggatattgtgcctgaacaacttgaagttgaagaatca
actgtactcgctgaagaaggtggcaaaagcagtacaccagaacccattttaccggacgaa
gcaactgcagcagcatctagtactagcgtcagtgcaaatcgtcaacaatttgcaaatttc
ttgaaaaatctcgtcaattgcgttaacaaagagctcatcgattcagctgcaattgaattt
ttgctcaatttaaacacgaaaagcaataggaaaaagttaacaacagccatttttggcgtt
aaaagaactcgtttggatttattgccattcttcgcgcggttggtggccaccataaacctt
gtgtcaagagacgtggccgttgatttgtgtcaaaaactgaagaacgaattcaagtatcat
atcgcaaaaaagaaccaaatgaatattgaatcgaagataaaagtggttcggttcattggt
gaaatgacaaaattcggtttatattcgaaaattgaagcattattttgtctgaaaatctta
cttcatgattttcaacatcatcaaatcgaaatgacgtgcgcatttcttgaagttgccggc
caatatttgtacaattgcaaggacagtcgtcttcgaaccagcgtttatttggagcaaatg
atgagattgaaaacggtgtcggcgcttgattcacggcacgtcgtacaaattgaaaattca
tattatttagtaaagccaccagaaggtgtagctaccacaaaaaagattcggacaccaatg
caaatgtatattcgatacctcatttatgaagaattgaacaagggaaatgttgataaaatt
ataaaatacatgcgtcgattgaattgggatgacaaagatacatacgattacattgttaaa
tgtctgtccaaagcatacaatattcgatattataatattcgttgtttggccgatttggca
agtggcatcagttcgtatcaggataaggcgattgttcgggtaattgataccgtatttgag
gatattcgagctggtttggaaattcattcaccgaaattggcacaacggcgcattgcaatg
gcgaaatatcttggtgaattgtacaattatcgtttaattgaatcgagcaatgtgctaaat
acattgtattcaatcatttcattgggcgtgacattcaatcatgaaattgtctccgagatg
gatccacccggaagtctatttcgattgaagttggcatgtgttctactggaaacatgcggg
cagtactttaccagcgcagtgagtcgaaaaaaattggattactttttgatattctttcag
aattattactggttcaagaagagtgatccgatttttagtagcatcgaaaatacttcggat
ctgtttccgattctcaccgatcattatttcaaagagtgcatcctagcgatacgtccaaaa
ttaaaattgtatcagagctacgaacaagccaaagaagaagtttcaaaattacaacaagaa
ctgtatcccaatctattctctgagaataatgagactgattcgttgggcaccatcgccgaa
gaagagggaaatgaacaaactgataccaataacgacaacacagaagatacttccgaagca
ttaggttcagacgatgaagtacggcaacggcgtacagatgatgaaaatagtccggatgac
tatggaactgatgcgggtgtcgatgcaatagatgatgatctttcgccctcgaatgaacct
gatccggcagcattaccgcgtgaaaagcaacgcactcaggaagacattgaattcgaagag
gcgttcgacaaaatgtacgttgatagctatcaagaacgtttacgagaatcagtgaaagcc
agcaaagatattgccgtaccgatgatggcgcgagctggcaacaaaaaaacatacgaccaa
attcaaagcaatgaaaatgtccaagagaagaaagacacagtgccatttgtattgatgcta
cgcggttcgaaaggtggcaaacagcagcaattcaaagtgttctcagcaccaaccgacagt
gccttggccattaatttacgtttgcaagagcaaaaaatacgcgaagaaaacgaaaaagtc
aaacgactcacattgaatattaccgaacgtatcgaagaggaagactatcaagaatcattg
cttcaaaatcaacgatcaccagcacagaatcgacaaagtcaacaaaaatcacagaaacaa
caaaaatacaaacatcaaaaaggtgcaccggatgctgatttaatctttggctaa
DBGET
integrated database retrieval system
