Contarinia nasturtii (swede midge): 116342021
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Entry
116342021 CDS
T08003
Name
(RefSeq) SR-related and CTD-associated factor 4-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116342021
03041 Spliceosome [BR:
cns03041
]
116342021
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116342021
Spliceosome [BR:
cns03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116342021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
RRM_5
Motif
Other DBs
NCBI-GeneID:
116342021
NCBI-ProteinID:
XP_031625350
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MDTVVAFNTELSGLYESKPPISKAKMTSITRSAMKAIKFYKHVVQSVEKFILKCKQEYKI
PGLYVIDSIVRQSRHQFGTEKDVFAPRFARNMQTTFANLFQCSPEDKSKIIRVLNLWQKN
NVFAPEVIQPLFDLADPNHPIYQNQGTSQDTNVNGMMNTITQESPAPNMTDEGHTMSSDM
SGPINSMSNVSHIDPSTIRHLQQLMLIRQKNNEPIASTSSNSAMGQDSVKFNKKLLDFDY
GDDEDDDNKGQSPRQSQQQLPTNSTLDNSNISQLLNDPNILRQLHNLQKLKQIEESKQSK
LAEMRMQEEAFEKQLATMLKKLPFANECDLSRQDNQIYGLQNAQLNPNQNGPMYMTSNAS
EQAKIDPDVELVSDDGKVEVINLDGNSRSPSIERDRYSKRRRSRSRSRDRRGRSRSRDRR
RSRDRERRKSTSRDRHRDRDRGKDKEKERERKRKGLPEIKKEHLSVCSTTLWIGHLSKLT
QQEELSDIFTKYGDIVSIDMIHPRGCAFLVMHRRQDAYKAIDGLNGYKLHGRVISISWAA
GKGVKSKQWKDYWDLELGVSYIPWDKLDQNTDFEQLEDGGMFDEDSMPAWLKEKLKNQSQ
QKDTNDAAAAAAAVAVNQVTNMAMFGMDQPPPTQQQLMTNMSQMVPPFPMGSGPVPRFMP
PMMTPGLPMGVPPPGHPMNGQMPMMIPQPIVPGMPMASLDKPPPGAPAPYFFPPIPQMPP
MAPVMTTPANVSGSDDQMDIEEDETNQPADPMFQKSQTMFNRPPPKIFGQNPMPSNDFSG
KDNRGPNFDDSGNSSHDRDNDMKDFRGRGVDRERDNRNRGNRSRDYSNERGGGSGGSSGR
NSNSRWSDGRGRSRENDRITPTDGINRDFNNSRNNMQWRDQPPNQMNFNNSYMDQSNPRM
NIGIGGGGPPALEDMRLPIPIDNLRGGPMGPNSMNSRRRGGNDYDRNRLSTGQQRDFYNQ
NRFGPPGGMNGPAGGMNMRGGNMQNFGPRNNFSWQPRSGMNNERSDGNFNRNDRNRSNNN
PRGPRGHWKDNEESGSPQKNRNHRGNFDGQKDRNSFSNFGDSSFNNDKQNDLGDLEPRNL
NESSHHESGDHSVTGGAFDETNESTPTTTTTTTTASDTTSTSKPANEERTLPRIQIKSPS
KLAQEFSEKQKQSDMMSTSSNEINRTNNNKTSVDLNTTPLYDEPTENRSYSLKEPTSSSH
SFDTQQPNHDTLASTTDANALVAETDNCEH
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggatacagttgttgcttttaataccgagctctcggggctttacgaatcaaagccgccg
atctcgaaagcaaaaatgacatccattacacggagtgcaatgaaagcgatcaaattttac
aaacatgttgtacaaagtgtggaaaaattcatattgaaatgcaaacaagagtataaaata
cccggtttgtatgtcattgattcgattgtacgccagtcgcgacaccaatttggcaccgaa
aaagatgtgtttgcaccgcgttttgcacgcaatatgcaaacaacatttgccaatctattt
caatgcagcccagaagacaagagcaaaatcatccgtgtgctgaatttatggcaaaagaat
aatgtatttgcacccgaagtcattcaacccctattcgatttggccgatccaaatcatccg
atttatcagaatcaaggtacatctcaagacacgaatgtcaacggtatgatgaatacaatc
actcaggagtcacctgcgccaaatatgactgatgaaggtcacacgatgtcatctgatatg
tcgggaccgatcaattcaatgtcaaatgtgtctcatatcgatccaagcacaatacgccat
ttgcaacaattaatgctcattcggcagaagaacaatgaaccaattgcaagcacaagctca
aattcggcaatgggacaagattcagtgaaattcaataaaaaattgctggactttgattat
ggcgatgatgaagatgatgataataaaggccaatcaccgcgccaatcacaacaacaattg
ccaacaaattcaacgcttgataacagtaacatatcgcaattgttgaacgatccaaatata
ctgcggcaattgcataatttgcaaaagctcaagcaaattgaagaatcgaaacaatcgaaa
ttggccgaaatgcgaatgcaagaagaagcatttgaaaaacaattggctacgatgttgaag
aagcttccgtttgccaacgaatgtgacctcagtcgacaggacaaccaaatttatggctta
caaaatgcccaattaaatccaaatcaaaatggaccaatgtatatgacatcgaacgcatct
gaacaagcaaaaatcgatccagacgttgaattggtttccgacgacggaaaagttgaagtg
attaatttagatggaaattcacgaagcccttcgatcgaacgagaccgatacagcaaacga
cgaagaagtcgaagcagatcaagagatcgacgcggtcgatcaaggtcacgggatcgtaga
cgaagcagagaccgtgaacgacggaaatcaacgtcacgtgacaggcaccgagacagagat
cgtggcaaggacaaagaaaaagagcgtgaacggaaacgcaaaggactgcccgagattaaa
aaagaacatttaagtgtatgtagcacaacattgtggattggccacttgtcgaaattgacg
caacaggaagaactgtcggatatttttaccaagtatggtgacattgtcagcattgacatg
attcatccgcgtggctgtgcatttttggtgatgcatcgacgtcaagatgcgtacaaagca
atcgacggtttaaacggctacaaattacatggccgtgtcatatcaatctcatgggcggcg
ggcaaaggtgtaaaaagtaaacaatggaaagattactgggatttagaattgggtgttagt
tacattccatgggataagctcgatcaaaatacggatttcgagcaattagaagatggtggc
atgtttgatgaagattcaatgccagcttggctcaaggaaaaacttaaaaatcaatcacaa
caaaaagatacgaacgatgcagctgctgcagctgctgcggtggcagttaatcaagtcaca
aatatggcaatgtttggcatggatcaaccgccgccaacacaacaacaacttatgaccaat
atgtcacaaatggtgccaccgttcccaatgggttcgggaccagtgccacgctttatgccg
ccaatgatgacgcccggtttacctatgggcgttccacctccaggccatcccatgaatggg
caaatgccaatgatgattccacagccaattgtgccaggaatgccaatggcatcacttgac
aaaccaccacctggtgcacctgccccatacttctttcctccaataccgcaaatgcctccg
atggctcccgtgatgaccacaccggcaaatgtgagtggttccgatgatcaaatggacatt
gaagaagatgaaacaaatcaaccagccgatccaatgttccaaaagagtcaaacaatgttc
aatcggccaccgccgaaaatttttggacaaaatccaatgccatcaaatgatttcagcggc
aaagataatcgtggaccaaactttgatgacagtggaaattcaagtcatgatagagataat
gatatgaaagattttcgtggacgaggcgttgatcgggaacgtgacaatcgaaatcggggc
aatcgatcacgcgattatagcaatgaacgtggtggcggtagcggtggaagtagcggtcga
aactcaaattccagatggtcagatggacgaggtcgatcacgcgaaaatgatcgtattaca
ccaaccgatggaattaatcgtgattttaacaattcaagaaataacatgcagtggagagat
caaccaccaaatcaaatgaactttaataatagttatatggatcaatcgaatccacgaatg
aatattggcattggtggtggcggaccaccagcacttgaagatatgagactaccaattcca
atagataacttaagaggcggtccaatgggaccaaactccatgaacagtagacgacgtggt
ggtaatgattacgaccgaaatcgcttatcaactggtcaacaacgtgatttctacaatcaa
aatcgattcggaccgccgggtggcatgaatggaccggccggaggtatgaatatgcgagga
ggcaatatgcaaaactttggaccaagaaataacttttcgtggcaaccaagatctggaatg
aataatgagcgatcagatggaaattttaatcgaaacgatcgaaatcgaagcaataacaat
ccccgcgggccacgtggtcattggaaagataatgaagaaagtggttcaccccaaaagaat
cgaaatcatcgtggaaatttcgatggccaaaaggatagaaatagtttcagtaatttcggc
gatagttcgttcaataatgataagcaaaatgatttgggtgatttggagccaaggaatttg
aatgaatcgtcacatcatgaaagtggtgatcacagtgtcaccggcggtgcttttgatgaa
acgaatgaatcgacaccgacgacgacaacaacaacaacaacggcgtccgacacaacctca
acgtcaaaaccagccaatgaagagcgaacattgccacgcattcaaatcaagtcaccgtca
aagttagcacaagaatttagcgaaaagcaaaaacaatccgatatgatgtccacatcgtca
aacgaaattaatcgaacaaacaataataaaacatcggtggatctgaatacaacgccattg
tatgatgaaccaactgaaaatcgatcatactcattgaaagaaccaacatcctcatcgcat
tcattcgacacacaacaaccaaaccatgatacactcgcgagtacgaccgacgcaaatgca
ttagttgcagaaacggacaattgcgaacattaa
DBGET
integrated database retrieval system
