Contarinia nasturtii (swede midge): 116342471
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Entry
116342471 CDS
T08003
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116342471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116342471
03009 Ribosome biogenesis [BR:
cns03009
]
116342471
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116342471
Spliceosome [BR:
cns03041
]
Complex A
U1 snRNP components
U1 related factors
116342471
Complex B
116342471
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116342471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Clathrin
Phage_integrase
AAA_22
DNA_circ_N
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
116342471
NCBI-ProteinID:
XP_031625965
LinkDB
All DBs
Position
Unknown
AA seq
576 aa
AA seq
DB search
MFLTKLRHLSSVYHRSNVVQETIRRTKINFPAITHTVRTYARFIDDDDDDAPIGRTRTPQ
RRDSFNDRRDSFGGRRDSFGGQRGSFGGQKGSFNQRGGSFVQRAGSFGNQGGFGDRGGSF
GGQRSSFGQHLNAVDYNLDELESLEKNFYQQSEITANRTEAEINAFREKHEISVPRDVPK
PIFTFKELQNLPPALAREIQRENFEDCTPIQAQGMPIALSGQNMVGIAQTGSGKTLAYIV
PAIIHILNQAPLEVNDGPIALVLAPTRELAQQIQKVATQFGRSSNINNAALYGGSAKAQQ
LSELRMGAQFVVATPGRLIDLLSTNCVNLRRCSYLVLDEADRMLDMGFEPQMRQIVSQIR
PDRQTVMWSATWPREVRNIARDFLGDEYTQLTVGSTELCANHNIKQVIRVCEERDKFREL
LQILENVSKLERSDQKTIIFVQTKRMADQLSYQLSNRGFKNQPIHGGRSQAQREMTLDSF
RSNRISTLIATDVAARGLDVSDIKNVINYDYPNTTEDYVHRIGRTGRSKSHGTAYTLFTQ
ENYNQADKLIAVLSEAKQDIAPELLELSGQRFGRKY
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtttctcaccaaattacgacatttgagttctgtatatcacagaagcaatgtagtgcaa
gagacaatacgcagaacaaaaatcaattttccggcaataacacatacggtgcgaacgtat
gcacgattcattgacgatgacgatgatgatgcaccaataggcagaactagaacaccacaa
cgaagagattcgtttaatgatcgaagagattcgtttggtggacgaagagattcgtttggt
ggtcaaagaggatcatttggcggacagaaaggatcatttaaccaacgcggtgggtcgttt
gttcaaagagctggatctttcggtaatcaaggaggatttggtgatcgaggtggatcattt
ggaggtcaacgtagttcatttggccagcatttgaatgcagttgattacaatctggatgag
ttagagagtttggaaaaaaatttctaccaacagagtgaaataacggcaaaccgaaccgaa
gctgaaatcaatgcattccgtgaaaaacacgaaataagtgttcctcgtgatgtaccaaaa
cccatttttacattcaaagagttgcaaaatctaccaccagctcttgccagagaaattcaa
cgagaaaatttcgaagattgtacaccaattcaagcccaaggaatgccgattgcactatca
ggccaaaatatggttggaatcgctcaaactggatctggaaaaactctggcgtacattgta
ccagccattattcatattttaaatcaagcacctttagaagtaaacgacggaccaattgca
cttgttttggcacccacccgggaactggcacaacagattcaaaaagtcgccactcaattt
ggtcgttcttcaaatattaataatgcagcactttacggtggatcggccaaagctcaacaa
ctttcagaacttcgcatgggcgctcaatttgttgttgcaacacccggacgtttgattgat
ttactttcaacgaattgcgtaaatttgcgtcgatgttcttaccttgttcttgatgaagcc
gatcgtatgcttgacatgggttttgagccacaaatgcgtcaaattgtatcacaaattcgt
ccggatcgtcaaactgtaatgtggtctgcaacctggccacgtgaagtgcgtaatattgca
agagatttcttgggcgacgagtacactcaattgacagttggttcaacagaactttgtgct
aatcataatatcaaacaagtcatcagagtctgcgaggaacgagataaattccgggaatta
cttcaaattcttgagaatgtttccaaacttgagaggagcgaccaaaaaacaatcatattt
gttcaaaccaaacgaatggccgatcagttgtcgtatcaattaagcaatcgtggattcaaa
aatcaaccaattcatggcggtcgttcgcaagcccaacgagaaatgactttagattcattc
agatcgaatcgaatcagtacacttattgctacggatgtagcagccagaggattagatgtc
agtgacatcaaaaatgttataaactatgattatccaaacacaaccgaagactatgtacac
agaattggacgcactggtcgatcaaaatcgcatggcacagcttatacgttgttcacccaa
gaaaattacaatcaagccgataaattaatagctgtactttcagaagccaaacaagatata
gctcctgaacttttggaattgtcaggacagcgatttggacggaaatattaa
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