Contarinia nasturtii (swede midge): 116342684
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Entry
116342684 CDS
T08003
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2
KO
K14793
ribosomal RNA-processing protein 9
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cns03009
]
116342684
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
90S particles
Other 90S particles
116342684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_Vps41
KNTC1_N
PEP5_VPS11_N
CPSF_A
Beta-prop_SPT8
WD40_like
DUF5854
Motif
Other DBs
NCBI-GeneID:
116342684
NCBI-ProteinID:
XP_031626257
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
MSSSSFFLKGKPKSAKKRKMPLDSKFGKKNELPKPPKVDQTEDDEEIHSSDEDEENMATE
QFSEVEDEEIAETPQDKRLKLAKLYLEEIEKEEKSRAEDRELLENNVSQRLTDEYLDSIG
KLRRKVAETYTGYDEKNIVQVKHKLHQLPVTCVCLTADNKFLFTGNKSAIVLKWNCDSMK
VIGNIDCNVGKSVDEIENSKKKRRPQTYALAVTTDGKFLAIGDMSPYIQIWCCEKLTHLQ
TFKGHRDIVTSLVFRKDTHDLYSASRDRSVKIWSLDEMAYVETLYGHQSAITCIDALSRE
RAITAGGSDRSVRIWKIVEESQLVYNGHSGSIDIVKLINEENFISAGDDGTLCLWSAMKK
KALCSKELAHGKSDENDQANWISAVATLINTDIIASGSCDGVIRLWKLGENYREMSLLFE
VPVRGFVNSLAFTNDGTKLIAAVGQEHRLGRWWRIKEAKNSIIVIPLLKKSS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgtcgtcatttttcttaaaaggaaagccaaaatcggcaaaaaagcggaagatg
ccattggatagtaaatttggtaaaaagaatgaattaccaaaaccgccaaaagttgatcaa
accgaagatgacgaagagattcacagctctgatgaagatgaagagaatatggcaacggaa
cagttttcggaagttgaagatgaagaaattgccgaaactccacaagataaacggctaaaa
ttggccaaattgtatttggaggaaatagaaaaagaggaaaaaagtcgagccgaagatcgg
gaactgttggaaaacaatgtgtcacaacgtttgactgatgaatatttggatagcattggt
aaactacggagaaaagtagccgaaacctatacaggatatgatgaaaagaatatagtacaa
gtaaagcataagttacaccaattgccggtgacatgtgtttgtctaacggccgataataaa
tttctgtttacgggaaataaatcagccatcgtgctgaagtggaactgtgacagcatgaaa
gtaatcggcaacattgattgcaatgttgggaagagtgttgatgaaattgaaaatagtaag
aagaaacgacgaccacagacctatgcactggcagtcacaactgatggcaaatttttggca
attggcgatatgagtccatacattcaaatctggtgctgcgaaaaattgacacatttacaa
acattcaagggacaccgagatattgttacatcattagtatttcgaaaagatacacatgat
ttgtattcagcaagcagagatcgttcggtaaaaatttggtcactcgatgaaatggcatac
gttgaaacactgtacggtcaccagtcagcgataacctgcatcgatgcattgtcacgggag
cgtgccattacagctggtggttcggatcgaagtgtacgcatttggaaaattgtcgaagaa
tcacagctagtgtacaatggccatagtggcagtatcgatatagtcaaattaatcaacgaa
gagaatttcatttcggctggagacgatgggacgctttgtctgtggagcgcaatgaaaaag
aaggcattatgttccaaggagttggctcacggaaaatctgatgaaaatgatcaagccaat
tggattagcgcagttgcgacattgatcaatacagatattatagcttcaggatcatgtgat
ggagtgattcgattatggaaattgggtgaaaattatcgagaaatgtcgcttttgtttgag
gtgcctgtccgaggttttgtaaacagtttagcgtttacaaatgatggaacaaaattgata
gcggccgttggccaagagcatcgattgggccgatggtggcgaatcaaggaagccaaaaat
tccatcatagttataccattgttgaaaaaatcctcataa
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