Contarinia nasturtii (swede midge): 116342789
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Entry
116342789 CDS
T08003
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03030
DNA replication
cns03410
Base excision repair
cns03420
Nucleotide excision repair
cns03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116342789
03410 Base excision repair
116342789
03420 Nucleotide excision repair
116342789
03430 Mismatch repair
116342789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cns03032
]
116342789
03400 DNA repair and recombination proteins [BR:
cns03400
]
116342789
DNA replication proteins [BR:
cns03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116342789
DNA repair and recombination proteins [BR:
cns03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116342789
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
AAA
BRCT
Rad17
AAA_30
AAA_22
AAA_19
AAA_5
AAA_14
RuvB_N
nSTAND3
AAA_18
AAA_33
RNA_helicase
AAA_17
AAA_16
PTCB-BRCT
NPHP3_N
AAA_7
BRCT_2
AAA_11
AAA_6
Motif
Other DBs
NCBI-GeneID:
116342789
NCBI-ProteinID:
XP_031626393
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MSKDIRSFFSSVAAKPARAITPKRKQNVLDDDSDEEKVKMPKKSKDNSEALRAKKRRVIY
SSDEDEPIVSKETKTTIASKVAKLKTVDVSNAFGNGPVKRIEKVKKPKQSKDADVFDADT
DDMELMNVDEEILSPKPTKQDLNKKDVKVKEEIKSPVKEKIPLKVKNTKSPEKVKQEKKS
PVKNEKRTPDESKEEKKGRKKDSDSDQSSKKKPATPASNKKPKQSHDESELDRSVYDEDQ
EKFERRRAAAALYKQMQKRAGPSAPGSKEIPKGEPNCLTGLKFVLTGVYESMEREEAAAV
IRDLGGSVTTAISGKTNYVVSGLESGPAKLAKAEDLGISILSEDDLLDLIREKSGQPTHN
KKVKEEMKSPKKEAKKSSKDAKKDKRTPVKSESPKKVKVEEKRVETEVEPKFTPSTPQIN
KDIPQPWVEKYKPKDIKEIIGQQGPASNLNKLIKWLQNWYKNNDGKKKHARPNPWAKNDD
GAAFKAALLSGPPGVGKTTTATLVCKHLGYDTIEFNASTTRSKKLLQNEVAGLVANKTLH
GYSYGHNETLTQKKVLLMDEVDGMAGNEDRGGLAELIGIIKSSSIPIICMCNDRNHQKMR
SLVNYCFDLRFARPQLPQIKGAIMSILFKEGVKLSPKTIEEVIQATNQDVRQTLNSLSLI
CAKPDAEGSGLRNDNGKKDLRLGPWEVVRKVFSAEEHKKMTLNDKADLFFHDYSLGPLFV
QQNYLSVVPNGPKSKTMEQVALTADSLSLGDLVENRIRSRQNWSILPVQAMYSSVLPGEY
MSGQITAQINFPGWLGKYSRTQKRSRMAQEIHDHTRIRTSASRESIRLDYAPFLLHNIVQ
PMIDDQNDGVEESLNVMKEYRLLREDIDSLVELTSWPGKKSEWDSVDGRVKAALTRAYNK
EIAPYSYSTVTAAKKKKVAASDEDYMNELGDGEAQFSDSDDGDDDKLENDTLIKSKKGGA
SSKAGGSGKGSKASSSGSSRSSASTSKKAASSKKK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagatattcgttcatttttttcatcagtagctgcaaaaccagcacgcgcaatt
actccaaaacggaagcaaaatgtgcttgatgatgacagtgatgaagaaaaggttaaaatg
ccaaagaaatcgaaagacaattctgaagcattaagagcaaaaaaacgccgtgtcatttat
tcgtccgatgaagatgagccgatcgtgtcaaaagagacaaaaacaacgatagcaagtaaa
gtagcaaaactgaagacggtcgatgtatcaaatgcattcggcaatggacccgttaagcga
attgaaaaagtgaaaaaaccgaaacaaagcaaagatgctgatgttttcgatgctgacacc
gatgacatggaattgatgaatgttgatgaagagatcttgtcaccaaagccgacaaaacaa
gacttaaataaaaaagacgtcaaagtaaaagaagagataaaatcaccggtaaaggagaaa
attccattgaaggtgaagaacaccaaatcgccagaaaaggttaagcaggagaagaaatca
ccggtgaaaaatgaaaaacgtacacccgatgaatcgaaagaagagaaaaaaggccgcaag
aaagattcggatagtgatcaatcgtcgaagaagaagccggcaacgccagcatcgaacaaa
aaaccaaagcaatcacatgatgaatccgaacttgatcgatccgtttatgacgaggatcaa
gagaaatttgaaagacgtcgtgcagccgctgcattgtataagcaaatgcaaaaacgtgcc
ggcccctcagcaccgggcagtaaggaaataccaaaaggtgaaccgaattgtttgactggt
ctaaaatttgttctaaccggggtttacgagtcgatggaaagagaagaggcggctgcagtt
ataagagatttgggcggcagtgtcaccacagcgatatcgggaaaaacaaattacgttgtt
tctggcttggaaagtggtccggcgaaattggcaaaggctgaagatttgggaatttctatt
ttatcagaggatgatttacttgatttgattcgagagaagtctggacagccaacacacaat
aaaaaggtgaaggaagagatgaaatcgcccaaaaaggaagcaaagaaatcgtcaaaagat
gctaaaaaagacaagcgcacaccggtaaaatctgagtcaccgaaaaaagttaaagtagag
gaaaaacgtgtcgaaacagaagtagaaccaaaattcacaccatctacaccacaaatcaac
aaagatattcctcagccatgggtggaaaagtacaaaccgaaggacattaaagaaatcatc
ggtcaacaaggacccgctagcaaccttaacaagctcatcaaatggttgcaaaactggtat
aaaaataatgatggcaaaaagaagcatgcccgtccaaatccttgggcaaagaatgatgat
ggtgcagcattcaaggccgccttactttctggtccgcctggagttggaaagacgactaca
gctactttagtgtgtaaacatttgggatatgatacgatcgaatttaatgcgtccactacg
cgaagcaaaaaactattgcaaaatgaagtggctggtttggtggcaaataaaacactccac
ggctacagttacggtcacaatgaaactctaacgcagaagaaagtactgctgatggatgaa
gtcgatggaatggctggcaatgaagatcgtggtggactagctgaattgattggaatcata
aagtcttcatcgattccaataatttgcatgtgtaatgatcgcaatcaccagaagatgcga
tcattggtcaattactgttttgatttgcgattcgctcggccacaattgccacagatcaaa
ggcgctattatgtcgattttatttaaagaaggtgtcaaactttcaccaaaaacaatcgaa
gaagttatccaggcgacaaatcaggatgtacgtcaaacgttgaattcattgtcattgatc
tgcgctaaaccagatgccgaaggcagtggcctacgtaatgataatggtaagaaagattta
cgactcggtccatgggaggtcgtacgaaaagttttctccgcagaagaacacaaaaagatg
acattgaacgataaagccgatttgtttttccatgactacagtttgggtccgctatttgtg
caacaaaactacttgagcgttgttccaaatgggccaaaatcaaaaacaatggaacaagtt
gcattgactgccgacagtttgagtttaggtgatttggttgaaaatcgcattcgaagccgt
caaaactggtcgatattaccggttcaggcgatgtacagctcggtgttgccgggcgaatat
atgtctggtcaaattacagcgcaaatcaactttccaggatggctcgggaagtattccaga
acacagaagcgcagtcgaatggcacaagaaattcatgatcatactcgcatacgtacgagt
gcgtcacgtgaatcaatccgccttgattatgctccattcttactgcataacattgttcag
ccaatgattgatgatcagaacgatggagttgaagagtcactaaatgttatgaaagaatat
cgtttattgcgtgaagatattgattcactggtcgaattaacatcttggcccggtaaaaag
agtgaatgggattcagttgatggtcgtgttaaggccgcactcactcgagcatataacaaa
gagattgcaccgtattcatattcaaccgtaacagctgcgaaaaagaagaaggtggccgct
agtgatgaagattatatgaacgagttgggtgatggtgaagcacagttcagcgatagtgac
gacggagatgacgataagctggaaaatgatacactgatcaaatcgaaaaaaggcggcgca
agctcaaaagcaggcggaagcggaaaaggaagcaaagcaagctcatctggcagcagtcgc
agttcagcgtccaccagcaagaaagctgcatcttccaagaagaaataa
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