Contarinia nasturtii (swede midge): 116342910
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Entry
116342910 CDS
T08003
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03008
Ribosome biogenesis in eukaryotes
cns03013
Nucleocytoplasmic transport
cns03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116342910
03015 mRNA surveillance pathway
116342910
03008 Ribosome biogenesis in eukaryotes
116342910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116342910
03009 Ribosome biogenesis [BR:
cns03009
]
116342910
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116342910
mRNA cycle factors
Stress granule specific factors
116342910
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
116342910
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
LRR_4
NTF2
LRR_8
LRR_9
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
116342910
NCBI-ProteinID:
XP_031626575
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MFSKMPRQFKRNNIWSKKHQGNKYDEHDDRDRIPTDITVRKPNNNNKGGNRRVSFKTGIV
AQGRLNFKGRNVEQGLRSQLIEEDDERMVDFDPSKASTFRRRNSPIPGSARNKTKLFETG
AGWFQVTIPHGNKYDKDFILKSLLKALSPEIFIPHYWSVESNSVIFYIDDYKTAKILANV
DRTIEMPNGFKLIIKVRNGSPQVKIDPTVRERMKLAMAKRYNAVTKALDLTQFHLDADLR
DIYCGLSRAPIFSAASDIITENIAELEALNLDGNKINTLEMLKKLLSKLPNLKILYLSNN
KIQSAMTLEPLKNSEIIDLVLKGNPLCDRFRDNSIYVREVRKRLPKLQKLDGVELPAQIG
FDVETEETTQLPSAKASFLVDQSGADIVRQFLQQYFVIFDSDNRQPLLDAYHENAMFSLT
CTYHPNPDFRITKFLPYNRNLKYVRDPEKRKNLLKIGRLPVVSYLSELPKTEHDSQSFAV
DLSLFTPTLITLTVTGIFREKQSSSVSVRHDLRSFHRTMIIVPINGGFCIKNDILHITNL
TMAQVKTAFKPIAPVPVTTGPSQPPVVPTPTSALNTSLPPDENTKLQMIEAMAQHSQMNL
EWSRKCLEETNWDFQRAGHAFTELHKQNKIPPEAFIK
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaaaaatgccgagacagtttaaacgcaacaacatttggagtaaaaaacatcaa
ggcaataaatacgatgagcatgatgaccgtgatcgaattccaacggacatcacagtccga
aaaccaaacaacaacaataagggtggaaaccgtcgtgtgagtttcaaaacagggatcgtt
gctcagggcagattgaattttaaaggtcgcaatgttgaacaagggttgcgttcacaactg
attgaggaagatgacgagagaatggttgattttgatccaagcaaagcgagtacatttcgt
cgacgcaattctccaattcctggatcggcaagaaataaaacgaaactattcgaaactggt
gccggatggtttcaagtaactattccgcatggcaacaaatacgacaaagattttatattg
aaatcgttgctcaaagccctttcaccagagatttttataccacattattggagtgttgaa
tccaattccgtaatattttacatagatgactacaaaacggcaaaaattttagcgaatgtt
gatcgaaccattgaaatgccaaatggtttcaaactgataatcaaagtacgtaacggcagt
ccacaggttaaaattgatccaaccgttcgcgagcgcatgaaattggcaatggcaaaacgt
tataatgccgtaacaaaagcacttgatctaacacaattccatttggatgccgatttacgt
gatatttactgtggtttatcacgggcaccaattttctccgccgcttctgatattatcacc
gaaaatattgctgaattggaggcgctaaatttggacggcaacaagattaacacattggaa
atgttaaaaaaattactaagtaaattgccgaatttgaagattttatacctgtccaacaat
aaaattcaatcagcgatgaccttggaaccattgaaaaattcggaaatcatcgatttagta
ctcaaaggaaatccattatgcgatcgttttcgtgacaacagtatctacgtcagagaagta
cgaaaacgattgccgaaattacaaaaattggatggcgttgaattacccgctcaaatcggt
ttcgatgttgaaaccgaagaaacgacgcaattgccatcggccaaagcatcatttttggtc
gatcaatctggcgctgatattgtgcgtcagtttcttcaacaatactttgttatattcgat
tcagacaatcgacaaccgttgttggatgcctatcatgaaaatgcaatgttttcattaacc
tgcacttatcacccaaatccagattttcggatcacgaagtttttgccgtacaatcgaaat
ttgaagtatgtaagagatccagagaaacgaaaaaatttgctcaaaattggacgtttaccc
gtggtttcatatttatcggaacttccgaaaaccgaacacgattcgcaatcatttgctgtt
gatttatcgctattcacgccaaccctcatcacacttacagttactggtatatttcgtgaa
aagcaatctagctcagtatcggttcggcatgatctgcgttcgtttcatcgtacgatgata
atagttccgataaacggagggttttgcataaagaatgacatattgcacataacgaatctg
acaatggcccaagtaaaaacagcattcaaaccgatagctccggtgcctgtaacaactggg
cccagtcaaccaccagtcgttccaacgcctacaagtgcactcaacacaagtctaccgcca
gatgaaaataccaaacttcaaatgattgaagcaatggcacaacacagccaaatgaatttg
gaatggagccggaaatgtttagaggaaacaaattgggactttcaacgagctggtcatgcg
tttaccgagcttcacaagcaaaacaaaattccaccggaagcgtttattaaataa
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