Contarinia nasturtii (swede midge): 116342933
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Entry
116342933 CDS
T08003
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116342933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116342933
Enzymes [BR:
cns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116342933
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116342933
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Zn_ribbon_IFT122_C
Motif
Other DBs
NCBI-GeneID:
116342933
NCBI-ProteinID:
XP_031626615
LinkDB
All DBs
Position
Unknown
AA seq
1644 aa
AA seq
DB search
MKKLHHLEANNLRFSVFSPNNIRALSVAKIVTPLLFDPLGHALPGGLYDSKMGPFSINSD
PCSTCYKTLDCNGHMGHIELSMLVYNPIFIKSVYDILRITCFSCFQMQISERVMEILVLQ
LKLLDAGYITEAQDIEIYKSETVSEYSKPARDSKLEEMKRLLDFGLQSCDVVENTKNSES
LRASIVSSSIKSNPNKRCIHCKEALKKVKYSFKKLMVTASKSEMSSDLNDSYGRSKTVNK
ALLADECREYLRKVYDLHEEMLKLLFPVLMHAPEDVEIATDIFFMDVIPVPSPIVRPANK
FQNEIREHPQTTILKNIVESNSLLKTICAKINGKVAEAQANETQALYDSATGDTSYEKMY
HAWQKLQTCVDQTWDSALGQNTHGVQGLKQVLEKKTGIIRLHMMGKRVNYAARTVITPDP
FINVDEIGLPEVFARKLSYPVPVTSWNVAELRKMVTNGPNVHPGANFVEDEQGRIQIVSG
VDAAKRESLAKMLLTPTEKGVKIVHRHLLNNDVMLLNRQPTLHKNSIMAHKVRILKGEKT
FRLHYSNCKSYNADFDGDEMNAHVPQNELGRSEAYNLINVPNQYLVAKDGTPLGGLIQDH
VISGVKMSMRGRFFNREDYQQLVFVALAHISKDIKFLPPTIIKPIRLWSGKQILSTILMN
IIPVGQHKINLKSTAKTSVKSWQTQEERLWLAGGTPLTENNMTESEVIIRGGELCVGVLD
KTHYGATPYGLIHCMYELYGGECSTQLLSSFSKVFTINLQREGFTLGVHDILVLPHADKN
RRKIIKKTRKLGPKAVATALELPLDTPFEILAEKMSEAINRDPKFRTLLDRAYKSALDSY
TNRINKICLPAGLLCKFPENNLQLMVGSGAKGSTVNTMQISCLLGQIELEGKRPPMMISG
RTLPCFPTFEMCPKAGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCL
IKHLEGLNVHYDMTVRDSDSSVVQFMYGEDGMDVSKSQFLKTKQFPFLFDNVKSIIPNKE
FLDELKDFENYDSVIKHKKKVRSWMKKHANDDKRRETSFQRFSREIVSDITMKDPNAINE
KTHRRNLDDQIVKLWSEADDEQKAKYSKKCVPRPDPVSSKYQPDCNFGSLPEHVENLMVG
YMKNLNIDKESFENVIAVKTMKSLVAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMN
VTLGIPRLREILMFATENIKTPSLDIPFKKHKNMDQSAETLRKKMARVTVADVLESINVQ
SHLVLRPYRARECCVRFNFLQADAYQQDFVIRPKKILRHMREQFFRLMFKAFAKAASEKY
SSVDIGAEEKKKKIAEQCEDREIDEREPEKDTTRAGGNDSSDDEAIGDEDDATAVKLKSK
AMDECDYDEAAIEEGEKIASDNESDVEMMEPENIADVDEDEVEKLGNEASEYNTRYRVDK
HTHLWCEITFQLNMTHKNVDLSIVLKDIAHKSVIAEVPHIKRAITYNKNEDIFLKTDGIN
ITEMFKHREVLDLDRLYTNQIHAMAQTYGIEAAARVVVKEVQQVFQVYGITVDPRHLLLI
ADYMTFDGTFKPLSRSGIESSASPLQQMSFESTLKFLKSAIVKSQLDSLNSPSSRLMIGQ
PCKSGTGAFTCMTNNTLLFKNLLK
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactgcatcatttggaggcgaacaatttgcgattttcggtatttagtccgaat
aacattcgtgcgttgagcgtggccaagatagttacaccgttgctctttgatccattgggt
catgcattgccgggtggtttatatgattcaaaaatgggtccattttccatcaactcggat
ccgtgcagtacgtgttacaaaacgctagactgtaatggccatatgggtcacatcgaattg
tcaatgcttgtgtataatccaattttcataaaaagtgtctacgacattttacgaattaca
tgcttcagctgctttcaaatgcaaatctccgaaagagttatggaaattttggtattgcaa
ttaaaattactagacgccggctatataaccgaagctcaagacattgaaatttacaaatcg
gaaacggtgagtgaatattcaaaaccagcacgagactcaaaattagaagaaatgaaacgt
ttattggatttcggtttacaatcatgcgatgttgttgagaatacaaaaaattcggaatca
ttacgagcatcaattgttagcagttccatcaaaagtaatccaaataaacgatgcatacac
tgtaaagaggcattgaaaaaagtgaaatattcattcaaaaagctaatggtaaccgcttca
aaatcagaaatgagctcggacttgaatgacagttacggccgttcaaaaacagtgaacaaa
gcattgttggccgatgaatgccgtgaatacttgcgcaaagtgtacgatttacacgaggaa
atgttgaaattactgtttccagttttaatgcatgcaccggaagatgttgaaattgcaacg
gatattttcttcatggatgtaattccagttccatcgccaattgttcgaccagcaaataaa
tttcaaaatgagatccgtgaacatccacaaacgaccattttaaagaacattgtcgaatcg
aacagtctattgaaaaccatttgtgcaaagataaatggaaaagtggccgaggctcaagcg
aacgaaacgcaagcattgtatgatagcgccactggtgatacatcgtacgaaaaaatgtac
catgcatggcaaaaattacaaacatgcgtcgatcaaacatgggacagtgcactcggacaa
aacacgcacggcgttcaaggtttgaaacaagttcttgaaaagaaaacaggaatcattcga
ttgcatatgatgggaaaacgtgtcaattatgcagcgcgtacggttatcacgccagatcca
ttcattaatgtcgatgaaatcggtttgcccgaggtgtttgcacgaaaattatcctatcca
gtgcctgtcacttcatggaatgtggctgaactacgaaaaatggttactaatgggccaaat
gttcatccgggtgctaatttcgttgaagatgaacaaggtcgaattcaaatcgtatctgga
gtcgatgcggccaaacgtgaatcgctcgccaaaatgttgttgacaccaacagaaaaaggt
gttaaaattgttcaccgtcatttgttgaacaacgacgtaatgctgttgaatcgtcagcca
acgttgcacaaaaacagtataatggcacacaaagtgcgcattctgaaaggagaaaaaacg
ttccgtcttcattattcgaattgtaaatcgtataacgctgattttgatggtgatgaaatg
aatgctcatgtgccacaaaatgaattgggccgtagtgaagcctataatttgataaatgtg
ccaaatcaatatttagtagcaaaggatggtacaccgttgggtggtttgattcaagatcat
gttatttctggtgtgaaaatgtcgatgagaggacgattcttcaatagagaagactatcag
caattggtgtttgtcgcattggcacacatttcaaaagacatcaaatttttgccgccaaca
atcataaaacccattagactgtggtcgggcaaacaaattttatcaactattttaatgaat
atcataccggtcggacagcataaaatcaatttaaaatcgaccgccaaaacgagtgtaaaa
tcttggcaaacgcaagaagaacgcctatggttagccggaggtacaccgttgaccgaaaat
aatatgactgagagtgaagttatcattcggggaggtgaattgtgtgtcggtgttttggat
aaaactcattacggcgctacaccttatggtttaattcactgcatgtacgaattgtacggc
ggagagtgttcaacgcaattactttcatcattttcaaaggtctttaccatcaacctgcag
cgagaaggtttcacgctcggtgttcatgatattttggtgttgccacatgccgacaagaat
agacgaaaaattatcaagaaaactcgaaagcttggaccaaaagctgtagcaactgcctta
gaattgccgttagatacaccatttgaaattttggccgaaaaaatgtctgaagcgattaat
cgtgatccgaaatttagaacactcttggatcgtgcctataaatctgcattggatagttat
acaaatcggattaataaaatttgtcttcccgctggtttactgtgtaagttcccagaaaat
aatttacaattgatggttggttccggcgccaaaggatcaacggtgaatacaatgcaaatt
tcatgtttgctcggccaaattgaattggaaggcaaacggccgccaatgatgatatcaggg
cgtacgttaccatgtttcccgacatttgaaatgtgcccaaaagcaggtggcttcattgat
ggccgatttatgactggcattcaaccgcaagatttcttcttccattgtatggctggtcgt
gaaggtttaattgatacagctgtaaaaacaagtcgttctggttatttgcaacgttgtctg
atcaaacatttggaaggattgaatgtgcactatgatatgacagttcgtgatagtgatagt
tcagtggttcaatttatgtacggtgaagatggtatggatgtttcgaaatcgcaatttttg
aaaaccaagcaatttccattcttgtttgacaacgttaaaagtataattccaaataaagaa
ttcttggacgaattaaaagatttcgaaaattacgacagtgttataaaacacaagaaaaag
gttcgatcatggatgaaaaagcacgcaaatgatgataaacgacgtgagaccagtttccag
agattctcccgtgaaatcgtgtcggacatcacaatgaaagatccgaatgcaataaacgag
aagacacatcgtcgaaatcttgacgaccaaattgtaaaactttggagtgaagcagacgat
gagcaaaaagcaaaatattcgaagaaatgtgtaccgcgtcccgatcctgtctcaagtaaa
taccaaccagattgtaatttcggctctctacccgaacacgtggaaaacttaatggtcggc
tacatgaagaatttgaacattgacaaagaatcatttgaaaatgtaattgcggtaaaaacg
atgaaatcactagtggcacccggtgaaccagttggtctgttggccgcacaatcaatcggt
gaaccatcaacccagatgacattgaacacttttcactttgctggtagaggtgaaatgaac
gtgacgctgggtattccacgtctcagagaaattttaatgtttgctacggaaaatataaaa
acaccgtcgctcgatataccatttaaaaagcataaaaatatggatcaaagtgctgaaaca
ctgcgcaagaaaatggccagagttactgtggccgatgttttggaatcgataaatgttcaa
tcacatcttgttctacgtccatatcgagctcgagaatgttgtgttcgttttaatttcttg
caagcggacgcttatcaacaagattttgtcattcgaccaaagaaaattcttcgacacatg
cgtgaacagttctttaggctaatgttcaaggcctttgcaaaggcggcgagtgaaaaatat
tcatcggttgatattggtgccgaagagaagaaaaagaaaatagctgaacagtgcgaagat
cgtgaaatcgatgaacgagaaccagaaaaagatacgactagagctggtggtaatgatagt
tctgacgatgaagccattggcgacgaggatgatgctacagctgttaaacttaagagtaaa
gctatggacgaatgtgattatgatgaagcggccattgaagaaggtgaaaaaattgcatcc
gataatgaatctgatgttgaaatgatggaaccagaaaatatcgcggatgtggatgaagac
gaagtggaaaaacttggaaacgaagcaagcgaatataatacgagatatcgcgttgataag
catacacatttatggtgtgaaatcactttccaactgaatatgacacacaaaaatgtcgat
ctttctatcgttttgaaagatattgcacacaagtcagttatagccgaagtgccacatatc
aaacgagcaatcacgtacaataagaatgaggacattttcctgaaaactgatggtattaac
attacggaaatgttcaaacaccgagaggtactcgacttggatcgactttatacgaatcaa
atccatgctatggctcaaacatatggtatcgaagccgctgctagagttgttgttaaggaa
gtacaacaagtgttccaggtttatggtattacagtcgatccccggcatttattactcatc
gctgattatatgacttttgatggaacattcaaaccgctcagtagatcaggcatcgaatcg
tcagcatcgccgctgcaacaaatgtccttcgaatctacgcttaagttcttgaaatcggcc
atcgttaagagtcagttagatagtttaaattcaccatcaagtcgattgatgattggtcaa
ccatgtaaaagtggtactggtgcttttacatgtatgacaaacaatactttgctatttaaa
aatcttttgaaataa
DBGET
integrated database retrieval system
