Contarinia nasturtii (swede midge): 116343551
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Entry
116343551 CDS
T08003
Name
(RefSeq) DNA mismatch repair protein spellchecker 1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116343551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cns03400
]
116343551
DNA repair and recombination proteins [BR:
cns03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116343551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
bMERB_dom
Motif
Other DBs
NCBI-GeneID:
116343551
NCBI-ProteinID:
XP_031627538
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MSNVKGTDVKPSQALNLDANQQKKFIRFYKSLGDKPASTVRFFDRNDYYSLHGEDAYLAA
KEVFKSTANVKTMAPDGATQLDYICLNKGNFEVLLRELLLVKNYRVEVFTKEQTGEFSIE
FKGSPGNLIQFESMLFNNVDMVVGSSILSVNMKQNGPQKTIGVACVEQNEQTFSVIEFDD
NDFYSELEATIVLLGPKEAILPSIDGEYERINQLLERNSVMVTVRKKSEFTHEKSNLEQD
LNTLLQFKDGQQANANSLKELKLTVAMASLNAAIQYLDLVSDACNHGHYKMNMMNLNRYV
HLDAAAVSALNLLPKPGTAVNSQAYKWQSILGVLDRCQTPQGHRLMAQWVKQPLQSKELI
KDRHDIVECFIDASTARADLYEDYMKRMPDVLMLSKKLLRKRATLQDIYRLYQVVIRTPK
IVEVLKDLDCKTIDKSLCEPIKDTLDELGNYKSMVEQIIDRDEVEKGEFMVRPSFDEELG
ELKKTMDEFESKIAKVRSKAVDDLNNDSVKLEYVSHLGYHFRLTLKEESALRNNKKYRTI
DTLKGGIRFTNDALEKLNKDFMEARVQYETQQQSIVEEVIKTALSYLGSFTRLNNHIAEL
DCLLSFAIAAVSAPIPYVKPKMSDESPRILNLQGMRHPCLELQEDITFIANDVAFKEDET
NMYIITGPNMGGKSTYIRSVGAAVLMAHIGSFVACEEAQIPYVDSILGRIGADDNISKGL
STFMVEMIETAGIVRTATSKSLVVIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFAT
HFHEITDLANTLSTVKNSHMVAISDKDTFTLLYQVRAGVMDKSFGIHVAKLANFPDEVVD
LAQKIYDESEDHYSQLKSQDDEDAAKIFLEAIEKLTAIDPELVDDSKINELAKNINIKVK
NSNNTYFREQFPQLFH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgttaaaggaaccgatgtgaaaccatcacaggcactgaacttagatgcgaat
cagcagaaaaagttcattcgattttacaagagtctgggtgacaaaccagcatcgaccgtt
cgtttttttgatcgaaacgactattacagtttgcacggtgaagatgcttacttggctgcc
aaagaggtattcaaatcaacggccaatgttaaaaccatggcacctgatggcgccacgcaa
ctcgattacatctgtttgaacaaaggcaattttgaagttctcttgcgtgaattattgctg
gtcaaaaactatcgtgtcgaagttttcacaaaggagcaaaccggcgaattttcgatagaa
tttaaaggatcacccggcaatttaatccaattcgaatcaatgctcttcaacaacgtagac
atggtggttggctcgtcgattctatccgtcaacatgaaacagaatggaccgcagaagacc
atcggtgtggcgtgcgttgaacaaaatgagcaaacattctccgtgattgaatttgacgat
aatgatttttattcggaattagaagcgacaattgttttactcgggccaaaagaagctata
ttgccatcgattgatggtgaatacgaacgaatcaatcaattgttggaacggaattccgtt
atggtaacggtacgtaaaaagagcgagtttacacatgaaaaatcgaatttggaacaagat
ctcaacacattactgcaattcaaagacggacaacaggcaaatgcaaactcattgaaagag
ctaaaattgactgtggcaatggcatcgttgaacgcagccattcagtatttagatttagta
tctgatgcttgtaatcatggtcactacaagatgaatatgatgaacctgaatcgttatgtt
catttggatgcggccgctgtatcggcgttgaatttattaccgaaaccaggcactgccgtc
aattcgcaggcgtacaagtggcaaagcattttgggcgttttggatcgctgccagacacca
caaggacatcgattgatggcacaatgggttaagcaacctcttcaaagtaaggaattgatc
aaggatcgtcatgatattgttgaatgtttcatcgatgcaagtacggcccgtgcagacttg
tatgaagactacatgaaacgtatgccagatgttttgatgttaagcaaaaaattgctacgt
aaacgtgccacactgcaagacatttatcgtttgtatcaagttgtgattcggacaccgaaa
atcgttgaagttctcaaggatttggattgcaaaacaattgacaagtctctatgcgaacca
attaaggatacgctcgatgagcttggcaactacaagagcatggtcgaacaaatcattgat
agagatgaggtggaaaagggtgaatttatggtgcgtccatcattcgacgaagagcttggc
gagttgaaaaagacaatggacgagtttgagtcgaaaatcgcaaaggttcgatcaaaggcg
gttgatgatttgaataatgattccgtcaaattggaatatgtatcacacttgggctatcat
ttccgtttgacattgaaagaagagtctgcattgcgtaataataaaaaataccgaactatc
gacacccttaaaggcggcattcggttcacaaatgatgcgttggaaaaattgaacaaagat
ttcatggaagctcgagtacaatatgaaacacaacagcaatcgatcgttgaggaagttatc
aaaacggcattgagctatttaggttcgtttactagattaaacaatcatatcgctgaattg
gattgtctgttgagctttgccatagctgctgtgtcggctccaataccatacgttaaacca
aaaatgtcagatgaatcaccgcgaattctcaatctccaaggaatgcgacatccgtgtctt
gaattgcaagaagatataaccttcattgcaaacgacgttgcattcaaagaagacgaaact
aacatgtacatcattacagggccaaatatgggtggaaagtcaacgtacattcgtagcgtt
ggtgcagctgtgcttatggcacacattggatcgtttgttgcgtgtgaagaagcccaaata
ccatacgttgactcaattcttggtcgcattggtgcagacgacaatatttcgaagggacta
tctacttttatggttgaaatgatcgaaacagctggcattgttcgcacggcgacatcaaaa
tcgttggttgtaattgacgaattgggccgtggcacgtctacatatgaaggatgcggaatt
gcgtggtcaattgccgagcatttagccaaggagacaaagtgcttcacactgttcgccaca
catttccatgaaatcaccgatttggccaatacattgagcactgtcaagaacagtcacatg
gttgctatctcagataaggacacattcacgttgttgtatcaagttcgagccggcgtcatg
gacaaaagtttcggtattcacgtggcaaaattggccaacttcccggatgaagtcgtggat
ttggcgcaaaaaatctatgatgaaagcgaagatcattattcgcaattgaaatcacaggat
gatgaagatgcggccaaaatttttttggaagccattgaaaaactcacagccatcgatccg
gaactggttgacgattcgaaaatcaatgaacttgccaaaaatatcaatatcaaagtcaaa
aactccaacaacacgtatttccgagagcagttcccacagctattccactaa
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