Contarinia nasturtii (swede midge): 116343769
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Entry
116343769 CDS
T08003
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116343769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116343769
Spliceosome [BR:
cns03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
116343769
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
PRP4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_HPS5
WD_LRWD1
WD40_like
Beta-prop_SPT8
Nha1_C
PurA
Motif
Other DBs
NCBI-GeneID:
116343769
NCBI-ProteinID:
XP_031627852
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MSDDEELIYKKPQKTIHYGTLDNSEWLKQQTLEEIQSDEDDYEPDSKKPTTAATSIAPPS
NSGGNINISNEYFDLENEMAKDKTALLEEFERRRKARLINVSTDDVEVKKNLRQLNEPIC
LFGEGPAERRRRLKELLASLGENAITQKMAEEEERKQLQREQETTWYHEGPDALRTSRIW
LAHYSLPRARERLEQARVARDVSSATKAGRMVELQKKLQSLSLECSQVGDTRPISQCRFN
DDSTLLMTSSWSGLCKLWSVPDCKQLLTLRSDCWYTCGIAFRPGVHKDDDNIVSMASSSY
DGVVKLWSFGSEESIADISGHVPHRVARVAFHPSGRFLGTTCYDHSWRLWDLEQKQEVLH
QEGHSRGVHSIAFQNDGSVCVTGGLDSFGRVWDLRTGRCIMFLEGHLGAIYGVDFSPNGF
HIATASGDNSCKIWDLRRRQPVYTIPAHTNLISDVKYQKDGGNFLVTSSYDCSVKIWSNK
TWQPLKTLQGHDGKIMSVDISPNSQYIVSSSFDRTFKLWTPEN
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaggaattgatttataaaaaaccacaaaaaacaatccattatggtacg
cttgataatagtgagtggctgaaacagcaaacgctcgaagaaatccaatcggacgaagat
gactatgaaccggacagtaagaaaccaaccactgcagccaccagcattgcaccaccgtcc
aattccggtggcaatattaacatctccaatgagtactttgatttggaaaatgaaatggca
aaggataaaacggcattgctcgaagagttcgagcggaggcgaaaggcacgtcttatcaat
gtcagtacggatgatgttgaagtcaagaaaaacttgcgtcaattaaacgaaccaatctgt
ctgtttggagaaggaccagctgaacgtcgaagacgattaaaagagctgctggctagtctg
ggcgaaaatgccatcactcaaaaaatggccgaagaagaagaacggaagcaattgcaacgt
gaacaagaaacaacctggtaccatgaaggaccggacgctttacgtacatctcgaatttgg
ttagctcattattcgcttccgcgtgccagagaacgattggagcaagctagagtagcgcgt
gatgtatcgagtgcaacaaaagctggccgaatggttgaattgcagaaaaaattgcaatcg
ttaagtttagagtgcagtcaggtgggtgatacacgaccaataagtcaatgtcgattcaat
gatgattctacgttgctaatgacatctagttggtctggtctgtgtaaattatggagtgta
cctgattgcaagcaattgttaacgcttcgaagtgattgctggtacacatgcggcattgca
tttcgtccgggcgtgcataaagatgacgataatattgtgtcaatggcatcgagttcttac
gacggtgtcgttaaattgtggtcatttggtagtgaagaatcgattgctgatatttctggc
catgtaccacatcgcgtggctcgtgtagctttccatccgtcgggaagatttttaggcaca
acttgttatgatcattcgtggcgactgtgggatttagagcaaaaacaagaggtattacat
caagagggtcactcaagaggtgttcatagcattgcattccaaaatgatggtagtgtttgt
gtaaccggcggtcttgattcatttggccgtgtatgggacctacgtactggtcgctgcatt
atgttcttggaaggacatttaggtgccatttatggagttgatttttcaccaaacggtttt
cacattgctaccgccagcggagataattcatgcaagatatgggatttgagacgtcgtcaa
ccagtatacacaatcccagcacatacgaatttgatctcagatgtgaaatatcaaaaggac
ggtggcaactttttggttacgtccagctatgattgttcggttaagatttggtcaaataag
acatggcaaccgcttaaaacacttcaagggcacgatggcaaaattatgagcgtcgatata
tcacccaactcacaatatattgtcagttcatcatttgatcgtacattcaaactgtggaca
ccagaaaactaa
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