Contarinia nasturtii (swede midge): 116343849
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Entry
116343849 CDS
T08003
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03022
Basal transcription factors
cns03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116343849
09124 Replication and repair
03420 Nucleotide excision repair
116343849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116343849
03400 DNA repair and recombination proteins [BR:
cns03400
]
116343849
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116343849
DNA repair and recombination proteins [BR:
cns03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116343849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
116343849
NCBI-ProteinID:
XP_031627983
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MDSKMELVKPVDLECIDLQRYLKSKPTTVIESLYNHPSICLAVYRELPEIARQFVIRILF
VEQPVPQAVIASWTSQLHSKEHSAATSTLTDLVIWRSVAIQGGLPAWELMPTFKKNLKIA
LLGGGRPWNMSNTLDPDAKARDIQFLDNYAMSRWRCVLHYMVGASGALKDTELEGISADA
VRILLSANLMKRDDTDGVPVITRQGFQFLLLDTQSQVWYFMLQYLDTCEQRKLNLSECLS
MLFQLSFSTLGRDYSTEGMSESLLVFLQHLREFGLVYQRKRKAGRFYPTRLALNISSKQS
AVAAITSENECAQERCNIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRD
SIRQAFRGGITADQIISYLEQHAHPTMLSNESTSIKTASLLPPTIVDQIKLWENERNRFT
YTEGVAYNQFLSQSDFISLRDYAQSINVLMWHNERTRTMVVTKNGHEDVKKFWKRYQKGS
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaaaatggagcttgtgaagccagttgatttagaatgtatcgatttacagcga
tatcttaaaagtaaaccaacaactgtgatcgaatcattgtacaatcatcccagtatttgt
ttggctgtttatcgtgaattacccgaaatcgctcgtcaatttgtaattcgaattctattt
gtcgagcaaccggtgcctcaggccgtaattgcatcatggacctcacaactgcattcaaaa
gaacattcagccgcaacaagtacactaaccgatttggttatttggcgttccgttgcaatt
cagggtggactaccggcatgggaactaatgccaacattcaaaaagaatttaaagattgcc
ttgttgggtggcggacgaccgtggaacatgtcaaacacattggatccggatgcaaaagca
cgtgatattcaatttttggacaattatgcgatgagccgatggcgttgtgttttgcactat
atggtcggtgcgagcggagcactcaaagatacagaactggaaggtatttcagcggacgcg
gttcgaatattgctgagtgcaaatctgatgaaacgagacgatacggatggcgtaccagtg
attacacgacaaggttttcaatttttattgctcgacacacaatctcaagtatggtatttt
atgcttcaatatttagatacgtgtgaacaaagaaagctcaatttgtccgaatgtttatcg
atgttgtttcaattgagcttctcaacactgggccgtgactatagcacagagggtatgtca
gaaagtttattagtatttttacaacatttgcgagaatttggattagtttatcaacggaaa
cgaaaggcgggccggttctatccaacaaggttggcattaaatatatcaagtaagcaatcg
gctgtggcggccatcacatccgaaaacgaatgcgctcaggagagatgtaacattattgtc
gaaacaaattaccgagtttatgcatacacagattcaaatcttcaagttgctctgctcggc
ctattcaccgaattattgtatcgctttccgaatttggtggttggagttctgacgcgagat
agcatccgacaagcattccgtggcggtatcacagcagatcagattatttcgtatttagaa
caacatgcccatccaacgatgctgtcaaatgaaagtacaagcataaaaacagcatcgctg
ctaccaccaacgattgtcgaccaaataaaattgtgggaaaatgaacgtaatcgattcaca
tacaccgaaggcgtagcgtacaatcagttcctatcacaaagtgatttcatctcgctgcgc
gactatgcacaatccatcaacgtattaatgtggcataatgaacgaacacgcacaatggtc
gtgacgaaaaatggacacgaagatgtgaaaaagttttggaaacgctatcaaaaaggcagc
tcataa
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