KEGG   Contarinia nasturtii (swede midge): 116344088
Entry
116344088         CDS       T08003                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
cns  Contarinia nasturtii (swede midge)
Pathway
cns03030  DNA replication
cns03410  Base excision repair
cns03420  Nucleotide excision repair
cns03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cns00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116344088
   03410 Base excision repair
    116344088
   03420 Nucleotide excision repair
    116344088
   03430 Mismatch repair
    116344088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cns03032]
    116344088
   03036 Chromosome and associated proteins [BR:cns03036]
    116344088
   03400 DNA repair and recombination proteins [BR:cns03400]
    116344088
DNA replication proteins [BR:cns03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116344088
  DNA Replication Termination Factors
   ELG1-RFC complex
    116344088
Chromosome and associated proteins [BR:cns03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116344088
DNA repair and recombination proteins [BR:cns03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116344088
  Check point factors
   HRAD17(Rad24)-RFC complex
    116344088
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_lid_RFC1 AAA_22 AAA_assoc_2 AAA_14 RuvB_N nSTAND_NTPase5 AAA_11 DEAD AAA_24 AAA_16 ResIII RCF1-5-like_lid AAA_30 DUF815 AAA_5 BrkDBD Thioredoxin_6 AAA_19 AAA_7 T2SSE Mg_chelatase ATPase_2 AAA_28 AAA_25 bpMoxR FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 116344088
NCBI-ProteinID: XP_031628342
LinkDB
Position
Unknown
AA seq 329 aa
MSSNIETTNLPWIEKYRPTQLNELVSHEEIIATISKFIDQNQLPHLLFYGPPGTGKTTSI
LACARRLYAPKDFHSMVLELNASDDRGIGIVRGRILDFASTRTIFSNGFKLIILDEADAM
TNDAQNALRRVIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLAEEQIVPRLDFVI
DQERLNVSDDGKKALIKLANGDMRKVLNVLQSTWMAYKNITEETVYLCVGHPTPSDIKTI
MNWLMSVESFEECFDKIQDLKMQKGLALEDILREVHLFVMRIELPPRVMSCLLIKMARIE
QSLAAGCCEKPQLSSFVAAFQIARNMVSV
NT seq 990 nt   +upstreamnt  +downstreamnt
atgagctcaaacatcgaaaccacaaacttgccatggattgaaaagtatcgaccaacacag
ctgaacgagctcgtttcacacgaggaaatcatagcaaccatttcgaaattcattgaccaa
aatcagttgccacatttgttattctatggacctcctggcacgggtaaaaccacgagcatt
ttggcatgcgctcgaagattgtatgcaccaaaggattttcattcgatggtactagagctg
aatgcatccgatgatcgtggtattggaattgttcgtggacgaattttggattttgcatcg
acccgaacaatcttctcgaatggattcaaattgatcattttggatgaagcagacgccatg
accaatgatgcacaaaatgctttacgaagagtcatcgaaaaatataccgataatgttcga
ttctgcatcatttgcaactatttgagcaagattataccggcacttcagtctcgttgcacg
cgatttcgatttgctccgttggccgaagagcaaattgttccacggctcgattttgtgatt
gatcaagaaagacttaacgtttcggacgatggcaagaaggcactcatcaaattggcaaac
ggtgacatgagaaaagtgttgaacgttcttcaaagtacgtggatggcttacaaaaatatc
accgaagaaacggtttatttgtgtgttggccaccctacgccgagcgacatcaaaacaatc
atgaattggctcatgtcggttgaatcgtttgaagaatgtttcgataaaattcaagatctg
aaaatgcaaaagggtttggccttagaagacattctgcgtgaagtgcatctttttgttatg
cgaattgaacttccgcctcgtgtaatgagctgtttattgattaagatggcccgaattgag
caaagtttagcggccggatgttgcgaaaaaccgcagctttcgtcatttgtggctgccttt
caaattgcacgaaatatggtctcggtataa

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