Contarinia nasturtii (swede midge): 116344333
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Entry
116344333 CDS
T08003
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns04140
Autophagy - animal
cns04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116344333
04148 Efferocytosis
116344333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cns04131
]
116344333
Membrane trafficking [BR:
cns04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116344333
Hops complex
116344333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_11
Clathrin
zf-RING_UBOX
zf-Vps39_C
zf_RING_Vps8
zf-RING_Vps41
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
116344333
NCBI-ProteinID:
XP_031628678
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MTSMFDQYDTAQKREQVPVSQMVNATPTSSGFVSLRTKEETPIFSKRKLPINLPHDILFT
RVCNNWLVVLMSHNVLLRLYLQQTDRQDEVFLEKHLTGLRVSNIFLDPTGNHLLIALATK
CPGFVPELLYLHRKSNKPKKIEKFRDHEITAVAFNHNNQSEASTGSILIGTSKGMIFETE
FGIEGEKMFQSNWKQIPNYLPIYGNHEIDGLVFDIGKGEHCPITGIEFYKVPNTSRYIVL
ASTLNRLYKFHENLRVDEKPPYLQHIFQSYLNVPEDIKDFHQINNKLKYSKLRVNYDKTA
KFPKSFGWLTDIGIYTGEIDQQAESPQFILTNEVIPYPETPAEESIEVHSSSYTSTTKKQ
VYPISFIQTDFHVLLLYSDHVTAVSLLNYQIVYEEYFAEQLGKFVDVTRDITSNAIFAST
GRNIFRFKVTNEHRHVWILYLEKNEFEMAKLYCHDNAAQLDMVLVKQAELKFSQKDYMAS
ARIYSETQTSFEDVCLKFMEINEYEALLVFLKNRLDKLDVQDKTQISMLVVWIVELYLTQ
MARCSVIEQQAKIRKYQMEFDAFMKTAKVVECVRNNRTVIYDLMASHGDNFNLNTLTAVN
KDFESVLDQYINQGKFKDAVSVLNRQTKPELFYKYCPMLMEEIPRETIDVIIGQGRRLNP
IELLPTLICQDTESQRNETIRYLDFCTVSLGCTDQAIHNFLVKLYTQHKSGKLMTYFELQ
GKDISLVHYDVHYALRVCAEHNAIRACVFLQCLLELWHPAVELALTFDTKLAQQTASQPS
DRELQRKLWLLIAEHEIKGKNDVKQALDLLKECDLLRIEDLLPFFDDFQKIDHFKEVICD
ALKEYNAKIQEQRIDMEESAKSAERVRNELQTFRNRSIVIDGQELCAICSGYLQVKPFFI
FPCGHKFHHDCLEHQIMEHLSNDNIFRLSKLKQQLQTLSLNIPVTGQADANPSQRDNIKN
EIETILAAECFFCGEHMINQIDKPFIEDWDRVNLDWQ
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaatgttcgaccagtatgatacagcacaaaaaagagagcaagtgcctgttagt
caaatggtaaatgcgacaccaaccagttcgggttttgttagtcttcgaacaaaagaagaa
acacccattttttcaaagcgaaaattacccatcaatcttccgcatgacattctattcaca
cgagtttgcaacaattggctggtcgttttgatgtcgcacaatgttcttttgcgattgtat
ttacaacaaacagatcgacaggatgaggtttttcttgagaagcatttgaccggcttacgt
gtgtcgaatattttcctggatccaactggaaatcatttgctcatcgctttggctacaaaa
tgtccgggttttgtgcccgagctcttatatctacatcgtaaaagtaataaaccaaagaaa
atcgaaaagtttcgtgatcacgaaattacggccgttgcttttaatcacaataatcaatcg
gaagcatcaaccggttcgatattgattggcaccagcaaaggaatgatttttgaaacggaa
ttcggtatcgaaggtgaaaagatgtttcaaagcaattggaaacaaataccaaattatcta
ccaatttatggaaatcatgaaatcgatggtttggtttttgacattggaaaaggtgaacac
tgtccaataaccgggatcgaattttataaagtgcccaatacaagcagatacattgtttta
gcatctacccttaatcgactttataagtttcatgaaaatcttcgggttgatgagaaacca
ccatatttacagcatatttttcaatcgtacttgaatgtgcctgaagatataaaagacttt
catcaaatcaataacaaattgaaatattcaaaacttcgtgttaactacgataaaacggca
aaatttccgaaaagtttcggttggttaaccgacattggaatatacacaggcgagatcgac
caacaagccgaatcaccgcagtttattttaaccaatgaagtgattccgtaccccgaaact
ccagctgaagagtctattgaagtgcatagttcatcgtatacatcgacgaccaaaaagcag
gtgtatcccatttcgtttattcaaacggatttccatgtgctattattgtattcagatcac
gtcaccgctgtgtcattgttaaactatcaaatcgtctacgaagaatattttgccgaacaa
cttggtaaatttgttgacgtaaccagagacataacatcgaatgcgattttcgcgagcacc
ggtcggaacatatttcgattcaaggtaacaaatgagcatcgtcacgtgtggattttgtat
ttggaaaagaatgaattcgaaatggcaaaattgtattgtcatgacaatgccgcccaattg
gatatggtgcttgtgaaacaggccgaattgaaattcagtcaaaaagattatatggccagt
gcacgaatttactcggaaactcagactagttttgaggatgtttgtttgaaattcatggag
ataaatgagtacgaggcattgcttgttttcctgaaaaatcgcctggacaaattagatgta
caggataagacacagatctcgatgcttgtggtatggatagttgaattgtatttaacacaa
atggcacggtgttcggtcatcgaacaacaggcaaaaatacggaaatatcaaatggaattt
gatgcttttatgaaaacagccaaagtcgtcgaatgcgttagaaataatcgcactgtcatt
tacgacttaatggcttctcatggcgataatttcaatttgaacacattgaccgcggtgaac
aaagatttcgaatcggttttggatcaatatatcaatcaaggaaagttcaaggatgccgtc
tccgttttaaatcgacagaccaaacccgaattattttacaagtactgtccaatgttgatg
gaggaaattccgagagaaaccattgacgttatcattggtcaggggagacgactaaatcca
atcgaactactgccgacccttatttgtcaagataccgaatcacagcgcaacgaaaccatt
cgatatctggatttttgtacagtgtcattgggttgcaccgatcaagcgattcacaatttt
ttggtgaaactttatactcaacataaaagtggaaaacttatgacttattttgaattgcaa
ggaaaggatatttcattggtacactatgacgttcattatgcactaagagtttgtgctgaa
cataatgcaattcgagcgtgtgtatttctgcagtgtttgcttgaattatggcatccagcg
gtcgaattggccttgacattcgacacaaagttggcacaacaaactgcttcgcagcctagt
gaccgtgaacttcagcgtaaactctggttgctcatcgctgaacatgaaatcaaaggaaaa
aatgatgtcaaacaagcacttgatttactcaaagaatgtgatttactacgaattgaagat
ttgctaccatttttcgatgattttcaaaaaatcgatcattttaaagaagtcatttgcgat
gcactcaaggaatacaatgcaaaaatccaagagcaacgcatcgacatggaagaatcggcc
aaatcggccgaacgtgtacgaaatgaattgcaaacattccgaaatcgttcgattgttatc
gatggacaagagttgtgcgccatttgttcgggatatttacaggtgaaaccgtttttcata
ttcccatgtggtcacaaatttcatcacgactgtttggagcatcaaattatggagcatttg
agcaacgataacattttccgtttgtcaaagttaaaacaacaattgcaaacattgagtttg
aacattccagtgacaggtcaagcagacgccaatccctcacaacgtgataacattaaaaac
gaaatcgaaaccattttggcggctgaatgtttcttctgcggggaacacatgatcaatcaa
attgacaaaccttttatcgaagactgggatcgcgtgaatctcgactggcaataa
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