Contarinia nasturtii (swede midge): 116344789
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Entry
116344789 CDS
T08003
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cns03036
]
116344789
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
116344789
Chromosome and associated proteins [BR:
cns03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116344789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Sec63
Helicase_C
ResIII
SNRNP200_wHTH
DEXQc_Suv3
AAA_30
AAA_22
nSTAND3
AAA_19
AAA_11
HTH_61
Motif
Other DBs
NCBI-GeneID:
116344789
NCBI-ProteinID:
XP_031629391
LinkDB
All DBs
Position
Unknown
AA seq
1340 aa
AA seq
DB search
MTSLRSLSDIPQKFRSVFAPIEEFNIVQSKVFDDVFKKKHHIVVSSPTGSGKTVIFELAI
VEMLMRLGLVEVNKLKIIYIAPTKALCNEIFLKWTKKFKTLNLKVVLVTGDTTDMDDLNV
ISPFHVIVTTPEKWDSLTRKWKEHCEITNAVRLVLIDEVHLVGDKNRGQTLEAIVSRFKT
FPNGKTIRFVAVSASLPNIQDFAQWIGAQSFETVRTFKLDDTKPSVEIVRKVCGYVPYGN
SFQFQKQLNPQLVGILQEVLEKTGKQILVFCSTRYDVELTLTDLMNSIELSVDEIQHHGS
KTIYVKDELKALHQRIKDDKLRTCVHRGFAYHHGGLTFDDREEIEDAYKKGLIKILVCSQ
TLACGVNLPAHAVIIKSTEMYIDGRNQEMPESMVLQMLGRAGRQEYNKSGLVYILTKKDK
VKYYENLSVGTVQIESHMHVDTKLAEFLNAEIALKTITNEKSIIEWLRMTFLYARTKAKE
INVAELKELYIKAVKKLRTSNLIEEKSDGGLLSRPFGTVMAKYFLSISTMDTFQKFKGNE
TIEKILDKIVGCNEFSEHYTRSNEVSNLNKISQFNRYQVIPNRKPPYKVSCLLQAVLGQS
QINTTSLIVDAQKILQTAERVVQSTIEFFNCSQYTNDCFKAILSSTLLAKSLRMRTWNDR
NIFGQLGISETAAKQLNEHEIYTIEELTGTQPREIEDILEKVIPYGTELIQEASKKFPRY
KVNVMKSAEHVFHICITQTNTQYVVDSTASGLTLLVGDFNNQLICYDDIQLENGVFEKLL
HFTPGARFLYVFVIHHSLAGADQMITYDCVEQTTSSDNRSAETKRLLNYIWEDSSKRSLK
QGNTNPSKFDSNGSVAVSKSNQKQNAAKLTHNNNLPFSKMSKNTNPQQSTISQHFRTVKQ
PTLFSKTASSTEKPKQIRLSPDIFSTPIEATQKPFYLYDYSQSCESNRNQIDHERLKSLP
PLNGDEPNNTKGHQANGHSQQIVETPIQNKIREERGGSDSFVTAKVICKKDLNEKEDELD
VLMFWDKMDSDEEEHQKESHGLEITTNTRDTGDTLNSVQKILNSTSSICHRDIIYSDFDD
DCDDWNSSFLSLDEANMEFNAYKDEFLKVDHESPKRLNLQNLEDKVATSSPQLLPGHQIN
QTQSTESHAATSSFDTNAATCGSFKRKVPLSEKSPISAFQYQPPRKMLKTYSQQKENINE
PITNKKSSLVDELMKNGAKNALESNSKMKNLRAAELNCNMFEPQRVDKVSLRSVLRIVRD
KPNNTELDINNTIEQYQKRLLTDPNYKQADYDKDVILLKVLKMTPKTEPERDVKDKLMVD
DDLTHCSFTDNFFNFATPDH
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattgcgcagtttaagtgatattccacagaaatttcgttcggttttcgcccca
attgaggaatttaacattgtccaaagcaaagttttcgacgatgtattcaagaaaaagcat
cacattgtggtcagttctccaactggaagtggcaaaactgtaatcttcgaattggcgatt
gtggaaatgttgatgagactgggattggttgaagtcaacaaattaaaaattatttacatt
gcaccaacgaaggctttatgcaatgaaatttttctcaagtggaccaaaaaatttaagaca
cttaacctaaaagtggttttggtcaccggcgacacaacagatatggacgatttgaatgtg
atttcaccatttcacgtaatcgtgaccactccagaaaaatgggactcactcacacgcaaa
tggaaagaacattgtgaaataacaaacgctgtgcgtttagtattgattgatgaggtgcat
ttggttggagataaaaaccgtggtcaaacactggaagcgattgtttcaagattcaaaaca
tttcccaatggaaaaacaatacgtttcgtcgcagtatcagcttcactgccaaacattcag
gattttgcacaatggattggcgcacagtcatttgagacagttcgtacattcaaacttgat
gacaccaaaccatcggtggagatagtccgaaaagtatgcggctacgtgccatatggaaat
tcatttcagttccaaaaacaactaaatccccaattagttggcattttgcaagaggtcctg
gaaaaaactggaaaacagattttggttttttgctcaacgcgatatgatgttgaactaaca
ttgacagacctaatgaacagtattgaactgtcagttgatgaaattcaacaccatggttcc
aagacaatttatgtgaaagatgagctgaaagcgctccatcaacgaattaaagatgacaaa
ttacgtacatgtgttcatcgcgggtttgcgtaccatcatggtggacttacctttgatgat
cgagaagagattgaagacgcatacaaaaagggtttgataaagattttggtgtgctcacaa
acattggcttgtggtgtgaatctacctgctcacgcggtcattatcaagtcaactgagatg
tacattgatggccgtaatcaagaaatgcccgaatcgatggttcttcaaatgctgggtcga
gctggccgtcaagaatataataaatctggcttggtatacattctaaccaaaaaagacaaa
gtcaaatattacgagaatttgtcggtgggtacggttcagatagaatcgcatatgcatgtg
gatacgaagttggcggaattcttaaatgctgaaatcgcattgaaaaccattacgaatgaa
aagagtataatcgaatggctccgaatgacgtttctctatgcacgcaccaaagcaaaggag
ataaatgtggctgagctaaaagaattgtacatcaaagctgtcaaaaaattgcgaacatcg
aatttgattgaggaaaaatcggatggcggattattgtctcgacccttcggaacagtcatg
gccaaatactttttgagtatttcaacaatggacacatttcaaaaattcaaagggaatgag
acaatcgaaaagatcttagacaaaattgttggatgcaatgagttttcggaacattacact
cggagtaatgaggtgtccaatttgaataaaatttcccagtttaatcggtatcaagttatc
cccaacagaaaaccaccgtataaagtgtcttgtctcttgcaggccgttttgggtcaatcg
caaattaataccacatctctaattgtggacgcgcagaaaatattacaaactgcagagcga
gttgtacaaagtacaattgagttttttaattgcagtcagtatacaaacgactgtttcaaa
gcgattctttcttcaacgctcttggcaaaatcattaagaatgcgcacttggaatgatcgt
aatatctttggtcaacttggcatttcggaaactgctgcaaaacaactaaatgaacatgaa
atatacacaattgaagagctaacgggaactcaaccacgcgaaattgaagatatcctagaa
aaggttattccatacggcacagaactcattcaagaagcatcaaaaaaattcccccgttat
aaagtgaatgttatgaaatcagccgaacatgtgtttcatatttgcataacacaaaccaac
actcaatatgttgtcgattcaactgcatctgggttaactttgcttgttggagacttcaac
aatcaactaatttgctacgatgacatccaacttgaaaatggggtttttgaaaaattgttg
cattttacaccgggagccagatttttatatgtctttgtgatacaccatagtctggctggc
gctgatcaaatgatcacatacgattgcgttgaacaaacgacatcgtcagataatcgttct
gctgaaacgaaaagactcttgaattacatttgggaagattcatcgaaacggtcgctgaag
caaggaaatacaaatccttcgaaattcgattcgaatggttcagtagccgtcagcaagtca
aatcaaaaacaaaatgcagcaaaattgactcacaacaataacttgccattctccaagatg
tcaaagaacacaaacccacaacaatcaacaatctcgcaacacttccggaccgtgaagcaa
ccgactcttttttctaaaacagcaagctcgactgaaaaacccaaacagatccggctatct
ccagacatattctccacgccaatcgaagctacacaaaaaccattctatctatatgattat
tcacagtcatgtgaaagtaatcgaaatcaaatcgatcatgaacgactcaaatctttgcca
cccttgaatggtgacgaacctaacaacacaaaaggacatcaggcaaacggacattcacag
caaattgtcgagacgccaattcaaaataaaatacgagaagaacgtggcggttcggatagt
tttgtcactgcaaaagtcatatgtaaaaaagatttaaatgaaaaagaggatgagcttgat
gttttgatgttttgggataaaatggattcggacgaagaagaacaccaaaaagagtctcat
ggtctcgaaatcactactaatacacgtgacaccggcgatacgctgaatagtgtgcaaaaa
attttgaattccacaagtagtatttgccatagagacatcatctattcggactttgatgac
gattgcgatgattggaacagtagttttctgtcacttgatgaagccaacatggaattcaat
gcatacaaagatgaattcttaaaagttgaccacgagagcccaaaacgattgaatttgcaa
aatttggaggacaaagtggcaacatcatcaccacaacttcttccaggtcatcaaataaat
caaacgcagtcaactgagagtcacgctgcaacatccagtttcgacactaatgcggccact
tgcggttctttcaaaagaaaagtaccattatcggaaaagtcgcctatttcagcatttcaa
taccaaccaccacggaaaatgttgaaaacctattcgcaacaaaaggaaaatatcaacgag
ccgatcactaataaaaagagctcgttagttgatgaattgatgaagaatggcgcaaaaaat
gccctggaatctaatagcaaaatgaaaaatctacgagctgccgaacttaattgcaatatg
ttcgagcctcaacgagtcgataaggtatcactacgatctgttttgcgcattgtgcgtgac
aaaccgaacaatacggaattagatataaacaatacaatcgagcagtaccagaaacgactt
ttaactgatccaaactacaaacaagcagactacgacaaggatgttattctgttaaaagta
ctcaaaatgacacccaagacagaaccagagcgggatgtcaaagacaaactcatggttgac
gacgatttgacacactgtagtttcaccgacaactttttcaactttgcgacacctgatcat
tga
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