Contarinia nasturtii (swede midge): 116344897
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Entry
116344897 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase p62
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116344897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116344897
03009 Ribosome biogenesis [BR:
cns03009
]
116344897
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116344897
Spliceosome [BR:
cns03041
]
Complex A
U1 snRNP components
U1 related factors
116344897
Complex B
116344897
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116344897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
SNF2-rel_dom
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
116344897
NCBI-ProteinID:
XP_031629612
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MVRAPANNFKRPGGEKSAHHHFNRDDRGKPSNNGARFGGGSRNGGGGFGGGGGSKKSVGE
NSSLSQPDWTSIQLSAFKKDFYKPNAIVQQRSEFELDAFRTEHSITIRGRAPNPIINFDE
INMPDYVMNEIRRQGYEKPTPIQAQGWPIALSGANMVGIAKTGSGKTLGYILPAIIHINN
QPRLYRGDGPIALVLAPTRELAQQIQQVAGEFGSESQVRNTCCFGGASRGPQARDLQRGC
EIVIATPGRLIDFLESGQTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMW
SATWPKEVRKLAADFLGEDYIQLNIGSLELAANHNIRQIINVCADSDKEEKLQALLESIY
DSDKEVGKIIIFAETKARVETVARYIRSFNVHCVAIHGDKSQQERDFVLRQFRTGKANIL
VATDVAARGLDVDGIRHVVNYDYPGNSEDYIHRIGRTGRSDTLGTSYTFFTENNARQASD
LVSVLREAKQEIDPKLLDMANRNRGRGNNFDKARRYGGFGGRSNGGFRNGGGFGGNGNSW
SGNRQRNGYGQSNGGGYSNGNTRKTFD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggttcgtgctccagcaaataatttcaagcgtccaggtggtgaaaaaagtgcgcatcat
catttcaatcgtgatgatagaggaaagcccagcaataatggagcacgcttcggtggtggt
tcacgtaatggtggcggcggatttggtggtggtggcggcagtaaaaaatcagttggtgaa
aattcatcattgtcacaacccgattggacctcaattcagttaagtgcattcaaaaaagat
ttctataagccaaatgcaatcgttcagcagcgttcagagtttgaacttgatgcattccgc
actgagcacagtattacaattcgtggtcgtgcaccgaatccaatcatcaattttgatgaa
atcaacatgcccgactatgtgatgaacgaaattcgtcgacaaggttacgaaaaaccaaca
ccgattcaagcacaaggttggccaattgcgttgagtggagcgaatatggttggcatcgca
aaaactggaagtggaaaaacacttggttacattttaccagccattattcacatcaacaat
caaccgagattgtatcgtggagatggaccgatcgcattagtgttggcacccacacgtgaa
cttgcccaacaaattcaacaagtagccggcgaatttggttccgaatcacaggtgcgaaat
acatgctgctttggtggagcatcacgtggcccacaagctcgagacttacagcggggatgt
gaaattgttatagccacacccggacgattgattgactttttggaatctggacaaaccaat
cttaaacgatgcacatatttggtgcttgatgaagccgatcgtatgcttgacatgggtttc
gagccacaaattcgaaaaattatcgaacaaattcgaccagatcgtcaagtattgatgtgg
tctgcaacatggccaaaagaggttcgtaaattggcagccgattttctcggtgaagattat
attcagctcaacattggttcattggaattggctgccaatcacaatattcggcaaatcatt
aacgtatgtgccgattcagataaagaagaaaaactacaagcattgctcgaatcaatctac
gacagtgacaaagaagttggaaaaattatcatttttgcggaaacaaaggctcgtgttgaa
accgttgctcgctacattcggagctttaatgtccactgtgttgctattcacggtgataag
tcacaacaagaacgtgactttgtgctgcgacaattccgtacaggaaaggcaaacatttta
gtagcaaccgatgtggcagctcgtggtttagatgtcgacggtattcgacacgtggtaaat
tatgattatccaggaaattcggaggactatattcatcgtattggacgtacaggtcgatca
gacactcttggaacatcgtacacatttttcacagaaaataatgctcgccaagcatctgat
ttggtgtctgtattacgtgaagccaaacaggaaatcgatccaaaacttttagacatggcc
aatcgcaatcgcggccgtggcaataactttgacaaagctagaagatacggtggtttcggc
ggacgatcaaatggtggattcagaaatggcggtggcttcggtggcaatggaaacagctgg
agtggaaacagacaacgaaacggttatggacagagcaacggtggcggttattccaatggg
aatacaagaaaaacattcgattaa
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