Contarinia nasturtii (swede midge): 116345062
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Entry
116345062 CDS
T08003
Name
(RefSeq) vacuolar protein sorting-associated protein 13
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cns04131
]
116345062
Membrane trafficking [BR:
cns04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
116345062
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
Motif
Other DBs
NCBI-GeneID:
116345062
NCBI-ProteinID:
XP_031629969
LinkDB
All DBs
Position
Unknown
AA seq
3004 aa
AA seq
DB search
MVFESIVTDLMNRFLGDFIENLDHKQLNIGIWGGDVVLKNLQLKQSALKELDLPVQLAYG
QLGKLVLKIPWKNLYSLPVEADVEDLYLLVAPNQAVNYDADKQKKVELDTKKGELSKLDE
ARKRELEKDKPKADKTFTEKLVAQIINNVQIRIRNVHIRYEDRSTSTIPFALGITLGALE
VQTTDADWNTAFVSEALSKIFKVAKLDGLAVYMNCNTPLFQSRSTNEFTQLFMDTIATSE
SRPENFTYVLGPITSVAKLKLNMNPELDSPPFEVPKVDLYLEMEKLAVGITRAQYQRLIE
LADGMGSMTRGIPYRKFRPFNTPYKGNSKLWWKFAYNCVMETEIKRRKRDWSWENMKQHV
NMCRTYADAYRTKLTAKKLTNDIQQCLDHHEEHLDLFNLVLIRKRVNFEVEQSGILQKPT
VQAGWFSSWWGGGKSDEPADKDKDILNQFKTAMTNEEKAKLYEAIGYSEGVVDLQLPEEY
VAITMHFNLKLLEICVRNEIVKPTDLEMSLSNVLSLQVSGVSCEIDQRPASSGLKLDLKM
REFTVFGYKQSDYLPVMVKSILESTTDSSLLDIKFEMNPLDKQCDQRVDVYACPLQIVYD
AETIIQLLQVFKMPSNANLSELTDAAADKLSNFKERSATGIQYVIEKHTRLEVNVSVQPN
YVIVPYGGKYIENKVPLMIISLGSILLKSDPRIEERDVAAMHGAGATSEDILKTMMDQAY
DKFNLNIDNIQILLAKPCDHWQDALTQGKISRLHLLEPTSLQVKAALCVVDDDPRLPKTR
LHAKIPSVGVSVTEQKVLDALSLATSIPLPEGDTTPMPLNKESLLVASSMSLKRYLDERQ
SKPKILENKQRDISEEEITQYTDLEFGFELNEVSIKIFKDSEQLFSPKSPGSGDETSTEE
YASATCTISTEGSISELESIGLPKQLAFSIKQLEMAVTQRTYDLKVSMKLGAISMAQYHH
PIATPNEQKKITMIETPRYAETNDYLLSLFYTNANKDSPEFTTKYKSTEQMVEINFTILI
LRLHQEGLTEILQFANNFQTKMEAILNKNNGYHMASAGPPLETIAEVDEHPEEEDETRVE
QKVIKRNTKKSATVVDSIKVKVVAKMEQVAIEIENENRPITNLKIENLNAGVIMKTSYTE
LTLKLQDIVVKDLNTETIHSTILTVIGGDALSCQIVLFNLEETSVYNSDDMKIDVSMGCV
KIVFLNWFVNSVLNFLDNFQAAQQAIADASAIAAETAKQNMVEAYSNAKRMLLNVRIKAP
IIVVPVDSKSLQAISIDLGHLCITNRCSNIPNSAVADRSPAILDEMKLELKDMQISKVEI
IQAGGTEDGLKHDDNILNPTSFALIIKRNLSSGWYKEIPELDISGRLKSIVMNLLSTDYQ
LLMSILSKNMTEGANERVVVQKPEIVTTPTSTAQVHFTDADEFSVLATGKELSRSSKRVT
TKSTKSIKPKTSSAENQVVASNDKSKKKIDTFLQFTFQMDSIVLNLYTVPGQGLASFGIH
FLSLKGCKLVDESLSASIVLCDVQLDDIRPDRQNFITKFMKKKEIEAPLNSSVSDKLPAS
QSSSNSMVDIVVRMQQDDTFANLKVSSFDLILSLEFLLKIAQFVTVPDDGKPVTTVAGTT
TAAAKPTEVVPATETDPNKKITVLINIEQPDIILVEAMDDINCLALILNTQMALRVRMQG
DKQVIEGEIADLKFYLCEFNPARRNATKHFIIQPCTISLHGNTPEAHGMNISLSTSDIRI
NVSPAIIEIISKAMSTVTTTEAKNESIIEELPDHSDLWEVQKYQEDDFWFLKVEEAQDTL
TAAEYFQPIADRKPEVCIVEVPSIVIVIETGFGYYTYPMLVIETKMNAEIRDWSSDISIE
SSLSLGMAFYNSTLAVWEPLIEPNEREKSNGLTEYQPWELAFNLKIEKPVENSLTESEPK
TKIQISSSDTLEMSVTKTGLDVLQDLGQAFSDAIKPQGLNKPDVTAPYIVENDTGFDIVM
NLKKGSLNLHSSHLPNPDGSTNHSLVVFNTTSTELDPNEITTCKISPGGRAYLQPKREHS
LAKITAFLTSEESQLQETLLHVLIGEIDKEITLPVHKADRRYFPLYRDTHQEPWGIISHV
HTEYGSTIITIHGVLKVKNHFSTAVNIFRKRNGALIEIGQVEPGSTFNVPLHALYATHKE
LFFSVSNYKTSVQGFNWKENPSDFKLMKYLQCDPIHTFEPFYITAIREREEVYHEVTTKY
TMLSACYVINLKPPLYLRNALPIDIQISVSGCTVSQIEREAKEATQNNHDVVKEFRGPHN
ASLTKSDFLDCGEKTVNPGDLLHLPTVKTTAKEGERRSLIVARLVQYLEKDWSCTTEVPA
NPPEFAVWSFKSYDSDEVMSIELGVMFENRLGSLQMTVYCPFWMINKTGLMLNYRKSRKT
EKHESAGNVQSTDESVNVLYHPPDWEGPILFSYREKVFFGKKRAAVRVENGDWSEKFALD
AAGSTGLVECKADGVKYEIAVHNTLTHNSLTKQITFMPFYVLTNKAPFAIQVQEEKRPGD
PWIVIETDQSVPLWPKSDCKRLHVRAGDDETVSRPFKFDEAQCTLLKLKNRYGGINVDVQ
VSEGGVYIQFTAYHPGDAPALIINHTDQLVKFWEKGNVNERRLQPFERMLYTWQDPAGDR
LIMWDDNDGTIENDLRRDGSKPIHSNNGDRPSYWVSFLDGTQRVLLFTNIEDVAFGANSA
NRLDKVTQEIEVDIHGIGLSLVNNNKQCDIMYIGIASSGVIWEEKKKGKYFKQMKIQEVQ
NLEERFQQYLRNKQMGIEEHHLYFDGAGKIPIDFDHMILRKSRPREIRRTFYPGLWIQLK
SSPYQLQLHAKINRIQIDNQLTDCIFPVVLAPVAPPKSVAASIELKPFVECSIVQRIIPH
SNVKQFKYLKVLTQEFHVKVDLLFINEIAEMFTAELTDEEKRKLFNKDIQQHSEQLSALV
LTQSTQDQKNFYDQLHLGPLKIHISFSMAVWKYKPLKVPDQASSSELLPTSRRHAKLSFC
SKRH
NT seq
9015 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagtattgttaccgatttgatgaatcgctttttgggcgatttcatcgaa
aacttggaccacaagcaactcaacatcggaatttggggtggtgatgtcgtattgaaaaat
ttgcagcttaaacaaagcgcattgaaagaattagatttgcccgttcaattagcttacggt
caactgggaaaattagttttaaaaattccatggaaaaatttatacagtcttccggttgaa
gcagatgttgaagatttgtacttgttggttgcaccaaatcaagccgttaactatgatgct
gataagcagaaaaaagtcgaattggatacgaaaaaaggtgaactatccaaattggatgag
gccagaaaacgtgaattggaaaaggacaagccaaaggctgataaaacatttaccgaaaaa
ctagtcgcacaaatcattaacaatgtacaaatacgcattcgaaacgtacacattcggtat
gaggatcgttcaacatcgaccataccatttgcgcttggtatcacattgggcgcacttgaa
gttcaaaccaccgatgctgattggaatacggcttttgtatccgaagcgctcagcaaaata
ttcaaagtggctaaacttgatggattagcggtatacatgaattgcaatacaccattattc
caaagtcgatcgaccaatgaatttacacaattgtttatggacacaattgctacaagtgaa
tcacgaccggaaaattttacatacgttcttggacccatcacatctgtggccaaactgaag
ttgaacatgaatccagaattggattctccaccatttgaagtgcccaaagttgatttatac
ttggaaatggagaaattggccgttggcatcactcgagcacagtatcagcgactcattgaa
ctggccgatggaatgggttcaatgacaagaggaataccatacagaaaattcagaccattc
aatacaccttataaaggaaattcaaaactttggtggaagtttgcatacaattgtgttatg
gaaacagaaataaaacgacgcaaacgtgattggtcatgggaaaatatgaaacaacatgtg
aatatgtgtcgaacgtatgcagatgcatatcgaacgaaattgacagcaaagaagcttaca
aacgatatacaacaatgccttgatcatcatgaagagcatttggatctgttcaatttggta
ttgattcgtaagcgtgtcaattttgaagttgaacagtcgggcatattacaaaagccaaca
gtccaagctggttggttttccagttggtggggaggtggaaaaagcgatgaaccagctgac
aaggataaagatattttgaatcaatttaaaacggccatgaccaatgaagaaaaagcaaaa
ttgtatgaagcaattggttatagtgaaggtgtagtggatcttcagttgcccgaagaatat
gtggcaataacaatgcattttaatttgaaattgttggagatatgtgttcgcaatgaaatc
gtcaagccaaccgatttggaaatgtcattgtcaaacgtgttatcattacaagtgtcggga
gtctcttgtgaaattgaccaacgtcccgcctcatctggcctcaaacttgatttaaaaatg
agagaattcactgtatttggttacaaacaatccgactacttgccagttatggtaaaatcg
atattggaatcaacgaccgacagttcactgttggatattaaatttgagatgaatccattg
gacaagcagtgcgatcaacgggtcgacgtttatgcttgcccattgcaaatcgtctatgat
gctgaaacaattattcagctattacaagtgttcaaaatgccttcaaatgcaaacttatca
gaattgacggacgctgccgcagataaattgtcaaatttcaaagaacgatcagcaactggt
atacaatacgttattgaaaagcatacacggcttgaagtgaacgtatccgttcaaccaaac
tacgttattgttccgtacggtggaaaatatattgaaaataaggtcccattaatgatcatc
agtttgggtagtattttgttgaaatcagatccaagaattgaagaaagagatgtggccgct
atgcatggcgctggtgccacatctgaagacatcttaaaaacaatgatggaccaagcctat
gacaaatttaatttgaacattgacaatattcagattttattagctaaaccatgtgatcat
tggcaagatgcgttgactcagggcaaaatatctcgtcttcatttattagaaccgacatca
ttgcaagttaaagccgccttatgtgtggtcgatgacgatccacgtcttccaaaaacgaga
ttacacgcaaaaattccaagcgttggtgtttcagttacagaacaaaaagtccttgatgca
ctgtcactagcaacaagtataccgttgccggaaggcgatacaacaccaatgcctttgaac
aaagagagtttattggttgcgtcaagcatgtcgttaaaacggtatttagatgaacgacag
tcaaagccaaaaattttggaaaataaacaacgggacatttccgaagaagaaatcactcaa
tacaccgatttggaatttggtttcgagcttaacgaggtttcaataaagatatttaaagac
tccgaacaactgttttcaccaaaatcacctggatcaggtgatgagacctcaacagaagaa
tatgcatcagcaacatgtacgatttcaactgaaggatcgatatccgaattggaatcaatt
ggtttgccaaagcaattggcattttcaataaaacaattggaaatggcggtaactcaacga
acctatgatttgaaggtgtcgatgaaacttggcgcaatctcaatggctcaatatcatcat
ccaatcgcaacgccaaatgaacagaagaaaatcacaatgattgaaacaccacgatatgcc
gaaacaaatgactatctcttatcgctattctatacaaatgcaaataaagattcgccagaa
ttcacaaccaaatataaatcaaccgaacaaatggttgaaattaattttaccattttaata
ttgcggttgcatcaagagggtcttaccgaaattttacaatttgccaacaatttccaaacg
aaaatggaggcaattttgaataaaaataatggttatcatatggcatcggccggaccgcca
ttggaaacaattgccgaagttgatgagcatccagaagaagaagatgagaccagagttgaa
cagaaagtaataaagagaaacaccaaaaaatcggcaacagttgtcgatagcattaaagtt
aaagtcgttgcgaaaatggaacaagttgccattgaaattgaaaatgaaaaccgaccaatt
accaatttaaaaatcgaaaatctaaacgccggtgttattatgaagacatcgtataccgaa
ctcacactcaaactgcaagacattgttgttaaagatttgaacaccgaaaccattcattcc
acgattttaacggtgattggcggtgatgcattgtcatgtcaaattgttctgttcaatttg
gaagaaacttctgtctataatagcgacgatatgaaaattgatgtttctatgggatgcgtt
aaaattgtcttcttgaattggttcgtcaattcagtgttgaatttcttggataatttccaa
gccgcacaacaagcgattgctgatgcaagtgctattgctgccgaaacagccaaacaaaat
atggtcgaagcatattcaaatgcaaaacgaatgctattgaatgttcgcataaaggccccc
attatcgttgtaccggttgactcaaaatcgcttcaagccatttccatcgatttgggtcac
ttgtgcatcaccaatcggtgttcaaacataccaaattcggcggtggctgatcgcagtccg
gccattttggatgaaatgaaattggaattgaaagatatgcaaatttcaaaagtggaaatt
attcaagcaggcggcactgaagatggtttaaaacatgatgataacattttgaatccaaca
tcatttgcgctcattatcaagcgaaatctgtcatccggttggtataaggaaattcccgag
cttgatatttcgggtcgtttgaagagcattgttatgaacctattaagtaccgattaccag
ttgctaatgtcgatactctctaaaaatatgaccgaaggagccaatgaaagagttgtcgtt
caaaaaccggaaatagtaacaacaccgacgagtaccgcgcaagttcattttaccgatgct
gatgaattcagtgtgctcgcaactggtaaagaattatcgcggtcatcgaaacgtgttaca
acaaagagcacgaaatcaataaagccaaagacaagcagcgcagaaaatcaagtcgtcgca
agtaatgataaatcaaagaaaaaaattgatacattcttgcagttcaccttccaaatggat
tcgatcgttttgaacttatacacagttcccggtcaaggtcttgcttcattcggtatacat
ttcttatcgctcaaaggatgcaaacttgttgatgaatcattgagcgcatcgattgtatta
tgtgatgtacaacttgacgatattcgtccggatcgacaaaactttattacaaaattcatg
aagaaaaaagaaatcgaagccccgttgaatagtagcgtttcggataaattgccagcttcg
caatcgtcatcgaactcgatggttgacattgttgtgcgcatgcagcaagacgatacattt
gccaatctcaaagtgtcaagtttcgatttgattctgtccttggaattcttgttgaaaatt
gcacaatttgtgactgttcccgatgatgggaaaccagtgaccacagtggcaggtacaaca
actgctgcggctaaaccgaccgaagtggttccggcaaccgaaaccgatccaaataaaaag
ataaccgttttaataaacattgaacagcctgacatcattctcgttgaagcaatggatgac
attaattgcctggcattgatattgaatacccaaatggcactgcgcgttcgtatgcaaggc
gacaaacaagtgatcgaaggcgaaatcgctgatttgaaattttatctgtgcgaatttaat
ccggccagacgaaatgcaaccaaacactttatcattcaaccatgtacaattagtttgcat
ggaaatacacctgaagcgcatggcatgaatattagtctgtcgacgagtgatattcggatt
aatgtttcacccgctattattgaaatcattagcaaggcaatgtcaactgtaacaacaaca
gaagcgaaaaatgaaagtatcatcgaagaattgcccgatcactctgatttgtgggaagtt
caaaagtatcaagaagacgatttttggtttttgaaagttgaagaagcccaagatacactt
actgccgccgaatactttcagccaattgctgatcggaaaccggaagtgtgcattgttgaa
gtgccttccattgttattgtcatcgaaaccggttttggttattacacgtatccgatgcta
gttattgaaaccaaaatgaatgccgaaattcgcgactggagctctgatatttcaattgag
agttcgttatcattgggaatggcattttacaatagcacacttgctgtatgggaaccattg
attgagccaaacgaacgcgaaaaatcaaatggtctaaccgaatatcagccatgggaattg
gcgttcaatttaaaaattgaaaaaccggtagaaaattcgctcaccgaaagtgaaccaaaa
acaaagattcagatatcatcatcggacacattggaaatgtcggttacaaaaaccggtctt
gatgtactccaagatttgggacaagcattctccgatgcaattaaaccgcaaggattgaat
aaaccggatgttacagcaccatatattgtggaaaatgatactggttttgatatcgtcatg
aatttgaagaaaggttcattgaatttacattcatcacacttaccaaatccggatggttcg
acgaatcattcattggtcgtattcaatacaacatcaaccgaattggatccaaacgaaatt
acaacgtgtaaaatttcgccgggtggtcgcgcatacttgcaaccaaaacgtgaacattca
ttggccaaaattactgccttccttacaagcgaagagagccaattgcaagagacacttttg
catgttctaattggtgaaatcgataaagagattacattgccggttcataaagccgatcga
cgatactttccattgtatcgtgatacacatcaagaaccatggggtattatttctcacgtc
cacactgaatatggtagcactataatcaccattcatggcgtattgaaggttaaaaatcat
ttttcaactgctgtcaacattttccgtaaacgaaacggagccctcattgaaattggccaa
gttgaaccaggatcaacattcaatgtaccattgcatgcactctatgctacgcacaaagaa
ttattcttttcagtttcaaattataaaacatcagttcaaggcttcaattggaaagagaat
ccaagcgattttaaattaatgaaatatttgcaatgcgatccgattcatacatttgaaccg
ttctatataacggcaattcgtgaacgcgaagaagtttaccatgaagtgacgacaaagtat
acgatgttaagtgcatgctatgttattaatttgaaaccaccactttatctacgaaatgca
ttgccaattgatattcaaatttcggtgtctggatgcactgtgtctcaaatagaaagagaa
gcaaaagaagcaacgcaaaataaccatgacgttgtcaaagaattccgtggtccgcataat
gctagtctaacaaaatccgatttccttgattgtggtgagaagactgtgaatcccggcgat
ttactacatttgccaacagttaaaacaacagccaaggaaggcgaaagaagaagcctgatt
gtggccagattggttcaatatttggaaaaagattggtcatgtactaccgaagtaccagca
aatccacccgaatttgctgtatggtcatttaaatcatatgattcagacgaagtaatgtcg
attgaattgggtgtcatgtttgagaatcgtttgggaagtctacaaatgaccgtttactgt
ccattctggatgataaataaaactggtctcatgctcaactacagaaaatcaagaaaaacc
gaaaagcatgagtctgctggcaatgtacagtcgaccgacgaaagtgtgaatgtgttgtat
catccgccagattgggaaggtccaatacttttctcatatcgtgaaaaagtattttttggt
aaaaaacgtgctgctgttcgagtcgaaaatggcgattggagtgagaaatttgcattggac
gcagctggttcaactggtttagttgaatgcaaagcggacggagtgaaatatgaaattgcc
gtacacaatacattgacacataattcgctcacaaaacaaatcacatttatgccgttctat
gtgctcaccaataaggcaccatttgcaattcaagtacaagaagaaaaacgtccaggcgat
ccatggattgtcattgaaaccgatcaaagtgttccattgtggccaaaatccgattgtaaa
cgattgcatgttcgagccggtgacgatgaaacggtgtcaagaccatttaaattcgatgaa
gctcaatgtactctgcttaagctcaaaaatcgatacggtggtataaatgttgatgttcaa
gtatcggaaggtggtgtttatattcaattcacggcatatcatccgggcgatgcgccagca
ttaatcatcaatcataccgaccaattggtaaagttctgggaaaagggaaatgttaacgaa
cgtcgattacaaccattcgaaaggatgttgtatacatggcaagatccagccggtgatcga
ttaattatgtgggacgataatgatggaacaattgaaaatgatttgcgtcgggatggttct
aaaccaatacatagtaataatggtgacagaccatcgtactgggtttccttcttagatgga
acgcaacgtgtactattgtttacaaacattgaagatgtcgctttcggtgcgaacagtgcc
aatcgattggataaggtaacccaagagattgaagttgatatccatggtattggtttatca
ttggtcaataataacaagcaatgcgatataatgtacattggaattgcaagttccggtgtg
atatgggaagagaaaaagaaaggaaaatacttcaaacaaatgaaaattcaagaagtacaa
aaccttgaagaacgttttcaacagtacttgcgtaacaagcaaatgggcatcgaagaacac
cacttatactttgatggggccggcaaaattccaattgattttgatcatatgattttaaga
aaatcacgaccgcgtgagatccgacgcacattctatccaggtttatggattcaattgaaa
tcatcaccatatcaattacaattacacgctaaaatcaatcgcattcaaatcgataatcaa
ttgaccgattgcattttcccagttgtattggcaccggttgctccaccaaaaagtgttgcc
gcctcaattgagctcaaaccatttgttgaatgtagcattgtgcaacgtatcattccccat
tcaaacgtaaaacagtttaaatatctcaaagtgttgacacaggagtttcatgttaaggtc
gatttgttgttcatcaatgaaatcgctgaaatgtttacggctgaattaaccgacgaagaa
aagcgaaagctgttcaacaaagacatacaacagcacagtgaacaattgtcggctctggtg
cttacacaatcaactcaggatcaaaagaatttctacgatcaattacatttgggaccactg
aaaattcacatttcattttcgatggccgtttggaaatataaaccgttaaaagttccagat
caagctagtagctcggagctactaccaacgagcagaaggcatgcaaaattgtcattttgt
tcaaagaggcattag
DBGET
integrated database retrieval system
