KEGG   Contarinia nasturtii (swede midge): 116345114
Entry
116345114         CDS       T08003                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cns  Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:cns00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cns03041]
    116345114
Spliceosome [BR:cns03041]
 Complex B
  Other components
   Complex B specific factors
    116345114
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_EML Beta-prop_CAF1B_HIR1 LisH_TPL ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_VPS8 WD40_MABP1-WDR62_1st Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_IP5PC_F Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_DCAF12 LisH_WDR26 Beta-prop_WDR75_2nd VPS8_N RMC1_N WDR54 DUF7165 zf_topless
Other DBs
NCBI-GeneID: 116345114
NCBI-ProteinID: XP_031630060
LinkDB
Position
Unknown
AA seq 509 aa
MSIEIESADVVRLIQQYLKESNLNKTLQTLQEETGVSLNTVDSVEGFISDIHNGHWDTVL
KTIQSLKLPDKKLINLYEQIVLELIELRELGAARSLLRQTDPMIMLKQHEAERYIHLENM
LQRAYFDPREAYPNGSSKEKRRGAIAQELSGEVSVVPSSRLLALLGQALKWQQHQGLLPP
GTQIDLFRGKAAIKDQEEEMYPTQLARQIKFGQKSHTECSLFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQANDNFMMMEHAVLSMTFSRDSEMLATGSQEGQIKVWRILTGQCLR
RFDKAHVKGVTALQFSRDNGQVLSASFDHTIRLHGLKSGKMLKEFKGHTSFVNEVCFTVD
GHSVISGSSDGTVKVWSFKTTECTATFKLLGNELAVNTVLLLPKNPEHFIVCNRSNTVVI
MNMQGQIVKSFSSGKREGGAFICATLSPRGEFIYCAGEDMVLYCFSVSSCKLERTLNVHE
KDVIGLTHHPHQNLLATYSEDGLLKIWKP
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtctatcgaaatcgaatcagctgatgttgttcgattgattcaacaatatttgaaagag
tcaaatttaaataaaacccttcaaacattgcaggaagagactggtgtatcattgaatacc
gtcgatagcgttgaaggttttatatccgatatacacaatggacactgggatacagtgcta
aaaacgattcagtcattaaaacttcccgacaagaagctaatcaatttatatgaacaaatt
gtattggaacttatcgaattgcgtgaattgggtgctgcacgttcgctgctccgtcaaacc
gatccaatgattatgttaaaacaacatgaggccgaacgatacattcatttggaaaatatg
ttgcaacgtgcatattttgatccgcgtgaagcctatccaaatggcagcagtaaggagaag
cgtcgcggtgccattgcccaagaattaagtggtgaagtatcggttgtgccatcgtcacgt
ttacttgcacttcttggccaggcattaaaatggcaacaacatcaaggtctcttgccaccc
ggcacacaaatcgatttattccgtggcaaagctgcaattaaagatcaagaagaagaaatg
tatccaacacaattggcacgccaaattaaattcggacagaaatctcacacggaatgctct
ctgttttcaccagatggacaatacttggttacgggcagcgtcgatggtttcattgaagta
tggaactttacaactggtaaaattcgtaaggatttaaaataccaagcaaatgataatttc
atgatgatggagcatgccgttctctcaatgacattctcaagagatagcgaaatgttagca
actggatcacaagagggacaaattaaagtatggcgcattctaaccggtcaatgtttacgt
cgtttcgataaagcacatgttaaaggtgttacagcattacaatttagccgagacaatggt
caagtgctatcggcttcattcgatcatacaattcgtttgcatggcctaaaatctggaaaa
atgctaaaagaatttaaaggtcacacatcatttgtgaatgaagtatgttttacggtggac
ggtcatagtgttatcagcggttcatcagatggcaccgttaaggtttggtcgtttaaaaca
accgaatgcacagcaacatttaaactacttggaaatgaattggccgtaaatacggtgctg
ctattgccgaaaaatcccgaacattttattgtgtgtaatcgatcgaatacagttgttatc
atgaatatgcaaggacaaattgtaaaatcgttttcgtctggtaaacgtgagggtggtgca
ttcatttgtgcaacactatcaccgcgtggagaattcatttattgtgccggagaggatatg
gtgttgtattgcttctcggtatcatcgtgcaaattggagcgtacactgaacgtacatgaa
aaagacgtaatcggtttaacacatcatccgcatcaaaatttattggccacatacagtgag
gatggtctgcttaaaatatggaaaccataa

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