Contarinia nasturtii (swede midge): 116345955
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Entry
116345955 CDS
T08003
Name
(RefSeq) transient receptor potential protein
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns04745
Phototransduction - fly
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09150 Organismal Systems
09157 Sensory system
04745 Phototransduction - fly
116345955
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cns04040
]
116345955
Ion channels [BR:
cns04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116345955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_3
Ank_4
Ank_5
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
116345955
NCBI-ProteinID:
XP_031631635
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MSSQSQENLIQSDPEAATNSDAHANSYDSLPDEKDYVLTATEKKFLLSAERGDCAGVRRL
IAQHKDNPTELNVNCVDPLNRSALISAIENENIELIKILLQENIKVNDALLHAISEQYVE
AVELLLLHEETHHKDGEPYSWESVDSSASTFTPDITPLILAAHRNNYEILKLLLDRGATL
PVPHDARCGCDECVTSSSSDSLRHSQSRINAYRALSSSSLIALSSSDPILTAFELSWELR
RLSRMETEFRTEYNEMRQAVQDFAKSLLDHSRTSQELEIMLNFNSIPGADVWEPGDHQSL
DRLKLAINYKQKQFVAHPSVQQLLASIWYEGLPGFRRKSISGQLIQVAKLSCMFPIYSTI
YMIAPSSQIGKFLKKPFVKFICHSSSYATFLLLLGAASQRIEYLALEFIGTNWSLDILED
WREHERGAIPGPTDSCIIIFIISLIWGEINSLYSSGIADYIGDLWNIIDFISNTFYVTWI
GLRITSWYVVQRDLSLGEDPWYPREEWDPFDPMLLSEGVFAAGMIFSFLKLVHIFSINPH
LGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYYADLEKKKCYHFSNSDIADFD
NNEKACGIWRRFANLFETSQSLFWASFGLVDLMAFELQGIKSFTRFWAMLMFGSYSVINI
IVLLNMLIAMMSNSYQIISERSDSEWKFARSQLWMSYFEDGGTLPPPFNLFPTTKLFRFG
DARRTTKSLIKRSQDKAKKRHDNVMRLLVRRYITAEQRKRDDFGITEDDVMEIRQDISTL
RFELIDIFNTNGMKTPNVNPSDAQFAGKKGKMMERRILKDFQIGIVESISEAVKNASGDV
FSSIAQAINKRSLHRNKSKKEDWNAIVRQNSVVRDPIGSTRNSLTRRDRRSLRRRILEEV
NQGLKMNTQKIVEYNPKLSEAKPSTRVAYVKFMAPTMRRESNAENNTAEVESGAKQQLRK
SILRTVSKTSMDSKPQSEQKEESTDDGKQIQEPSVEQKVDIDKKPENNKEKVETSTLSVE
SDNSTQSDNVASAMTSRAYSPIIEDPNERDSRPPSTDLVESGGSRASLPMTSASPVPDQS
RTMSPISGSSRSRTPDASMPDKAISSKPTSPTPVERTKVDEKVDDTKSTVEANTPQPIFK
PLTTEKGKSKTTGKSIGGWI
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagttcccaatcacaagagaatttaattcaatcagatccagaagcggcaaccaacagt
gatgcacatgctaattcatatgattcgcttccagatgagaaggattatgtgctgactgcc
accgaaaagaaatttttattaagtgccgaacggggtgattgcgctggagtgcgtcgatta
atagctcagcacaaagataacccgactgagctaaatgttaattgtgtggatccgctaaat
cgttcggcattgatttcggcaatcgaaaatgagaatatcgaacttattaaaatcttactt
caagaaaatatcaaagttaacgatgctctattacatgcaatcagcgagcaatatgtcgaa
gcagtggaattgctcttgctacacgaagagactcaccataaagacggagaaccctattca
tgggaatcggttgatagttcagcatcaacttttacaccggatataacaccattaatattg
gctgcccaccgaaacaattatgaaattctaaagttactgttagacagaggtgccacactg
ccagtaccacacgacgcacgatgtggttgcgatgaatgtgttacatcaagttcatcggat
tcattgcgtcattcacaatcgcgtattaacgcttatcgggcattgtcatccagttcacta
atagctttaagctcttccgatccaatacttactgcctttgaattatcatgggagcttcga
cgtttaagtcgaatggaaaccgaatttcgcaccgaatacaatgaaatgcgtcaagcggtt
caagattttgcaaaatctttgcttgaccattcgcgtacatcacaagaattggaaatcatg
ctaaacttcaattcaataccaggcgcagatgtctgggaaccaggcgaccatcaatcgcta
gatcgattaaaattagctatcaattacaaacaaaaacaatttgtagcacatccatcggtg
cagcaattgcttgcgagcatttggtacgaaggtttaccagggtttcgaagaaaaagcatt
tccgggcaactaattcaagtagcaaaattgagttgcatgtttccaatctacagcacgatt
tatatgattgcgccatcttctcaaataggaaaattcttgaaaaaaccgtttgtcaaattt
atttgccattcatcaagctatgcaacatttttacttttacttggagcggcctcacagcgc
attgaatatttggcacttgaatttattggtacaaattggtcgcttgacattttagaagat
tggagagaacatgaacgtggcgccattcctggtccaacggattcttgcatcataatattt
atcataagtttgatttggggtgaaattaattcgctgtattcaagcggcatagctgattat
ataggtgatctatggaatataatcgattttatatcgaatacattttatgttacatggatt
gggcttcgcatcacttcgtggtatgttgtgcaaagagatttgtcactcggtgaagatcca
tggtatccgcgcgaagaatgggatccattcgatccaatgttattatctgaaggtgttttt
gcggctggcatgatattttcatttctcaaattggtgcatatattctccatcaatcctcat
ttgggaccattgcaagtgtcactcggtcgaatgataatcgatattatcaaatttttcttc
atctatacattggttttgtttgcattcgggtgtggtttaaatcaattgctctggtactat
gcagatttggagaagaagaaatgctatcatttctcaaattcggatattgctgatttcgat
aataatgaaaaagcgtgcggaatttggagacgttttgccaacctattcgagacatctcaa
tcattgttttgggcatcgttcggtcttgttgatttgatggcctttgaattacagggcatt
aaaagtttcacacggttttgggcgatgttaatgtttgggtcgtacagtgtaatcaacata
attgtgcttctaaacatgttgattgctatgatgagcaattcatatcagataatctcggaa
cgatcagatagcgaatggaaatttgcccgttcacaattgtggatgagttattttgaagat
ggaggcacattaccgcctccgttcaatttatttccaaccacaaaactatttcgttttggc
gatgctagaagaacaaccaaaagtcttatcaaaaggtctcaagataaagctaaaaagcgt
catgacaatgtaatgcgcttattggtacgtcgctatataacagccgaacaacgaaagcgt
gacgacttcggtattaccgaggacgacgttatggagattcgtcaagatattagcacacta
cgatttgaattaattgatattttcaatacgaacggcatgaaaacacccaatgttaatcca
agcgatgcacaatttgctggcaaaaagggcaaaatgatggaacgtcgcatattaaaagat
ttccaaattggtattgttgaatcgatcagcgaagcagtgaaaaacgcatctggcgacgtt
ttttcatcgattgctcaagcaattaataaacgttccttacatagaaacaaaagcaaaaag
gaggattggaatgccattgtacgacaaaattcggttgtcagagatccgatcggatcaaca
cgaaattcactaacacgtcgcgataggcgcagtctgcgacgtcgtattttggaagaggtc
aatcaaggacttaaaatgaacactcaaaaaattgttgaatacaatccaaaattgtcggaa
gctaaaccaagcactcgagttgcatatgttaaatttatggcgcccaccatgcgaagagaa
agtaatgccgaaaataatacggcagaagtggaatcaggtgcaaagcaacaattgcgtaaa
tcaatacttcgaacggtttcaaaaactagcatggattcaaaaccacaaagtgaacaaaaa
gaagaatcgacagatgatggaaaacaaatacaggaaccctccgttgaacaaaaagtagac
atagataagaaaccagaaaacaataaagagaaagtcgaaacatcgacattgtctgtcgag
tcagataatagtacacaatcagataatgtggcgtctgccatgaccagccgagcatattca
ccaattattgaagatccaaatgaaagagatagccgtccaccatcgactgatttagttgaa
agtggtggttcgcgagcatctttgccaatgacatcagcatcaccagttccagaccaatct
cgaactatgtcaccaatatcgggttcttcacgatcacgaacaccagatgcttctatgcca
gataaagcaatatcatccaaaccgacttcgcccactccggtagaacggacaaaagtcgat
gaaaaagttgacgatacgaaatccacagttgaagcaaatacaccgcaaccaattttcaaa
ccccttacaacggaaaagggtaaatcgaaaacaactggaaaaagtattggcggttggatt
taa
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