Contarinia nasturtii (swede midge): 116345959
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Entry
116345959 CDS
T08003
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns04140
Autophagy - animal
cns04142
Lysosome biogenesis
cns04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
116345959
04140 Autophagy - animal
116345959
04148 Efferocytosis
116345959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cns04131
]
116345959
Membrane trafficking [BR:
cns04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116345959
Hops complex
116345959
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
116345959
NCBI-ProteinID:
XP_031631639
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MPILSTTCDWFILRPGITYRKSELYTMQWAADTELYQMQVVAAPYGGPMAIVRDSKEFIK
VGGSTVKPTIRIFTASGLLLASINWNSGNLLTIGWSDAEELLCVQDDGLVLIYNMFGQYQ
HTFSMGQEAKDTKVIDAKIFASNSGTGVAVMTTNYRIFLINSIKEPKNRQLPEMPKSILD
PTCWAIINEDRNTCSLVAREHELFKLSQGYSVCSVQTVSIENEFKSIVAMSVSYNHRFLA
LYTNNGIVWMGTSDLQTKYCEFKTNQSEKPKQIEWILDSENYSQADAIVIAYPSLLLVVT
VAGDSNMYSYDSVPFLIPEMDCVRILNNSEHEMLQKVPTCVNNIFAINSQKPSSYLFGAY
QKYEEKSHQSDEYLGLIKNKLEESVNECIEAASYEFDTNTQKSLIRAAYFGKAFIASHNP
DKYIETCRVLRVLNALRDTKIGIPLTYAQFNRLKPHVVLDRLVFRKHYGLAIQIAKHLKL
PESRILEHWAFHKVTYDKNDEDVARKISEKLKLAGAQGISFCNIAKKAQELGRKNLAIKL
LEMESKSSLQVPLLLKLGESKRALMSATKSGDTDLIYTVLLQLKETTQLADFQMIVRTFP
TAQNLYKKYCNLNSKTALQEIFNQEDDFVAQAEYALREDISSSNFELPLLTASVAYKKAH
KDIEAELCEDSRKLLKDQKTFADKYTLSRSQSFYGMPVHETIKMLLKLGDLKNAEKKKTE
YKVPDKRFWWLRIQVLSETFQWDELEKFSKAKKSPIGYEPFVEVCLKQHNIEEVKKYLPK
CRNDKKIKWYIRAGLAEEAAQASFEQRDLNSLYTVHMNATKNNDRALVAKVENFIEKLSE
KR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgccgattttatcgacgacatgtgattggttcattttgcgaccaggaatcacatatcga
aaaagtgaactatacacaatgcaatgggctgctgacactgaattgtatcaaatgcaagtt
gttgcagctccttatggcggtccgatggctattgtacgtgattcaaaggaatttatcaaa
gtgggcggttcgacagttaagccaacaattagaatattcacagcatccggtcttctgttg
gcatcaattaattggaacagtggcaatcttttgacaataggttggtcagatgccgaagag
ttactttgtgtacaagacgatgggctcgttctaatttacaatatgtttggccaatatcag
catacatttagcatgggacaagaagccaaagatacaaaagtcatcgatgccaaaatattt
gcatcaaattcagggacaggcgttgctgtaatgaccaccaattatcgtatattccttata
aatagtataaaagagccgaaaaatcgacaattgcccgaaatgccaaaatcgatactcgat
ccaacgtgttgggccattatcaatgaagatcgaaatacatgcagtttggttgcacgtgaa
catgaattgttcaaattaagccagggatatagtgtgtgttccgtacaaacggtatccatt
gaaaatgaatttaaaagtattgtcgcaatgtccgtttcgtataatcatcgatttttggca
ttgtatacaaataacggcatcgtttggatgggaacatctgatttgcaaacaaaatactgt
gaatttaaaacaaatcaatctgaaaaaccaaaacaaattgaatggatactcgattccgaa
aattattcgcaagctgatgccattgtaattgcctatccgtcattgttactggttgtgact
gttgctggtgattccaatatgtacagctatgattcggtgccgtttctcataccagaaatg
gattgtgtacgaatattgaataatagtgaacatgaaatgcttcaaaaagttccgacctgt
gtgaataacatatttgcgataaacagtcaaaagccgtcgtcctatttattcggagcatat
caaaaatatgaggagaaaagtcatcaatccgacgaatatttgggtctgattaaaaataaa
ctcgaagaatcggtgaatgaatgcatcgaagcggccagctatgaatttgacacaaatact
cagaagagcttgattcgagctgcatactttggcaaagcatttattgccagccataatcca
gataaatatattgaaacatgtcgcgttttacgcgttttgaatgccttacgagatacaaaa
atcggaatacctttaacatatgcacagtttaatcgattgaagccacatgttgtgttggat
cgattggtgtttcgcaaacattatggtttggccattcaaatagcaaaacatttaaaattg
ccggaatcacgaattttggaacattgggcctttcacaaagtcacttatgataaaaatgat
gaggatgtagcacgaaaaatatccgaaaaattgaaattggccggcgctcaaggcatttca
ttttgtaatattgcaaaaaaggcacaagaactgggccgaaaaaatttagcgataaagtta
ttggagatggaatcgaagagtagcttgcaagtaccgttgctacttaaactcggcgaaagt
aaacgcgctttaatgagtgctacaaaatcgggcgatacagatttaatttatacggttttg
ttacaattaaaagagacaacgcaattggctgatttccaaatgattgttcgaacatttcca
actgcacagaatttgtataagaaatattgcaatttaaatagcaaaactgcattgcaagaa
atattcaatcaagaagatgattttgtggcccaagctgaatatgcgcttcgtgaagacatc
tcgtcctcgaactttgaattacctttgttgacggcatcggttgcttataagaaagctcat
aaagatattgaagcagaattgtgcgaagattctcgcaaattgttaaaggatcaaaaaaca
tttgcagacaaatatacattgtcacggtcacaatcattctatggtatgcctgtacatgag
acgataaagatgttgctgaaattgggcgatttgaaaaatgctgaaaagaagaaaaccgag
tataaagtgcctgataagcgcttctggtggctacgaattcaagtgctatcagaaacattc
cagtgggatgaattggaaaaattttccaaagcaaagaagagtcccatcggttatgagcca
ttcgttgaagtttgcttaaagcagcacaatattgaagaagtcaaaaaatacctacccaag
tgtcgtaacgataaaaaaattaaatggtacattcgtgccggattggcagaggaagcggcc
caggccagttttgaacaacgtgatctaaacagcctttatacggtgcatatgaatgccacg
aaaaataatgatcgagcacttgtagccaaagtggaaaatttcattgaaaaactctcggaa
aagcgatag
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