Contarinia nasturtii (swede midge): 116345999
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Entry
116345999 CDS
T08003
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116345999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cns04131
]
116345999
Membrane trafficking [BR:
cns04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116345999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
WD40_CDC20-Fz
TPR_Vps41
Clathrin
ANAPC4_WD40
zf-RING_2
Beta-prop_LRRK2
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
zf-RING_5
zf-ANAPC11
Beta-prop_RIG_2nd
zf-C3HC4
Beta-prop_EML_2
Vps39_1
Motif
Other DBs
NCBI-GeneID:
116345999
NCBI-ProteinID:
XP_031631736
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MNSLKAPSLQSLLDSDRGSNDSLLAESLQLDLDELDDAEYSIPHVDMMPSLESILSELDT
DSDIVSDVSVRITPTPSIDDRPKTGTMLRHVLLQGVTSQITSASERINSGLATSVAVSDM
IAVGTSHGHIMAFDILQALRWCCQEYLQQGAVTSLAFNDESTRLLAGFARGYIVMIDTST
GDSLRVLSDAITPNSGVLNLKWTGKPTLALCSDTGGSVWSLSFTRRLGKRGCDSKCLFSG
ARGEVCSIEPLIIDEEDHPLKSYCIVALATLSKFFVVMIRPRLKVIKFHPLQGPPDSLPL
ISWQMVLIQSADSTRVIDPVLAAARGTNVYFHQICIQSGKISLLFLRHISLSYSLLAVHW
MGPKTIATVDRNEMLHLTDVRTTKESECIDIANAGLVYGSAHFKGFATGGNVSPAFALAG
TYACYNSIISKGSQLYILGARSLQSINVRSWSDRITHLAQNQRWCEACSLAIEGYRSAGD
RSRRKQMAKDRVIQLVEEYLTASARCPELCLNSIMACLIEIQEYDMLWQELWERLNTKDT
YIILLSEQIENGNISYISPIVAQCLCDYWLKQSPSKLEEIVLKLDWQCLDLHQVLSAAKR
EKLYRAQMHLNTVALGDYCLSLTELIPQIVNEKDHNLGNYLLVYISSCLSGRGYPSGYIN
PDIIQNVKHEVLRCLTSIHSVHAVESELSYPYLRALLTFDAQETLNVISLAFQEKEFSGE
LGQSHRQRIVNILLDIMKPEYFQWTEIGCLLNFVAHEIATNNLPDDSMLLQKVLAYVKME
TIENESGRQHSDREQAWLALLEADRINTLSLTEHLAIARQSKCYRVVEHLLEKQKSFDQI
LDCYLLDIHRYNEIWTYLQLNANRPERKIFQQCYDHFDKLLEINCEKITQFMIEFFPRNV
SQLIRLLEKDERHLFAFISILLKHGIAISSHDCEMYLDLLCRYDDATNVDGFLRTNENYR
LEAAIEILKKYNLNDCLIYLYERQGDIDAAFNLSLKLLQITPEGMAENRALELCALCSRS
LDVLSNGDREKLWFTLIKTVLSRNDLNSITKSVLHAASGHVDLTNLVQLVLSSSSETGNL
GDIKHLLVGMLANSKYEILLQQTTARILGHDLHRMLAKEKQIAMRGLSIKSIKCILCRSK
LYNQQESLIFGICGHAAHHTCVQDMYTDPEKKLHCPRCDNEINEMKPVELAKPNDCFYEN
NANDSCSLTLQLEAPPRSIG
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaattcattaaaagcaccatcactgcaatcgctcttagattcagatcgtggctcaaat
gatagtcttttggctgaatcgctgcaattagatcttgatgagctggatgatgctgaatac
tccattcctcatgtcgatatgatgccatcattggaaagtattctaagtgaattggacacc
gattccgatatagtgtccgatgtaagtgttcgaattacaccgactccctcaatagatgat
cgacccaaaactggaaccatgctcaggcatgttctgctgcaaggagtcacatcgcaaata
acatctgcttcggaacgaattaattcaggattggcaacatccgtagctgtatcagatatg
attgcggttggcacatcacatggtcacattatggcatttgatatattacaagcgttaaga
tggtgctgtcaagaatatttacaacaaggtgctgtcacaagtcttgcatttaatgatgaa
agtactcgtttattggctggatttgccagaggatatattgtaatgattgatacatcaacg
ggtgattcgttgcgagttctttccgatgccataacaccaaatagtggtgttctcaattta
aaatggaccggaaaaccaacattggctttgtgctcagatactggcggctctgtgtggtca
ctgagtttcacgcgacgacttggcaaacgcggctgtgattcaaagtgtttatttagcggt
gcaagaggagaagtttgttcaattgaaccgttaattatcgacgaagaggatcatccattg
aaatcatattgtattgttgcattggcaactctgtccaaattttttgtagtcatgattcgg
ccaagattaaaagttataaaatttcatccattacaagggccaccggacagtctaccactc
atatcatggcaaatggttctaattcaatcagctgattcgacacgtgtcattgatccagtg
ttggctgcggctcgtggcacaaatgtgtatttccatcagatttgcattcaatcgggcaaa
atatcattgttatttttgcgtcacataagcctgagctatagtttattggctgtgcattgg
atggggccgaaaacaatagcaacagttgatcgaaatgagatgctgcatttaactgatgta
agaacaacaaaagaatccgagtgtattgatattgcaaatgccggtcttgtctatggttcg
gcacattttaaaggttttgcaactggtggaaatgtatcgccagcatttgcattggctgga
acgtatgcatgctataattcgatcatatcaaaaggttcacaattgtatatattgggcgca
agaagtttgcaatcaataaatgtacgttcgtggagtgatcgaataacacatttggcacaa
aatcaacgatggtgcgaagcatgttcactggcaattgaaggctatcgaagtgctggtgat
cgttcacgacgaaaacaaatggccaaagatcgtgttatccaactggttgaagaatatttg
acggcaagtgcaagatgtccagaactgtgccttaattcaattatggcctgtttgatcgaa
attcaagagtacgatatgctgtggcaagagctatgggaacggctaaacaccaaagacaca
tacattatattgttgagcgaacaaattgaaaatggtaatatatcgtatatatcgccaatt
gttgcgcaatgcctatgcgattattggcttaagcaatcgccatcgaaattggaagagatt
gtattaaaattggattggcaatgtttggatttgcatcaagtattatcggcggcaaaacgg
gaaaaactctatcgggcacaaatgcatttaaatacagttgcattgggcgattattgtcta
tcactcaccgaactcattccgcaaattgttaatgaaaaagatcacaatttgggcaattat
ttgctagtgtatatatcaagttgtttatcaggacgtggctatccatcgggctatataaat
ccggatattattcaaaatgtcaagcatgaagtgttacgttgtttaacatcaatacattca
gtacatgccgttgaatcagagttatcctatccatatttacgtgctttgctcacatttgat
gcgcaagaaacgttgaatgtaatctcgttagcatttcaggagaaagaatttagcggtgaa
ctgggccaatcgcatcgtcaacgaattgtcaatattcttctggatatcatgaaaccggaa
tactttcaatggaccgaaattggatgtttactaaattttgtggcacatgaaatagcgaca
aataatttaccagacgattcaatgttattgcaaaaagtgttggcctatgtaaaaatggaa
acaattgaaaatgaaagcggacgacaacattcggatcgtgaacaagcatggcttgcattg
ctcgaagctgatcgcatcaatacactaagtttgactgaacatttagctattgctcgtcaa
tcgaaatgctatcgggtggtcgaacatttattagagaaacaaaagtcattcgatcaaatt
ttggattgttatttactggatatacatcgatacaatgaaatttggacatatttacaactg
aatgcaaatcgacccgaacgaaaaatcttccaacaatgctacgaccattttgataaattg
cttgaaataaattgtgagaaaattacgcaatttatgatcgaattctttccacgaaatgta
tcccaactgatacgattgcttgaaaaggatgaacggcatttatttgcatttatttcgata
ttgctgaagcacggtatcgccattagttcgcatgattgtgaaatgtatttagatttgttg
tgtcgctacgacgatgcaaccaatgtcgatggcttcttgcgcacaaatgaaaattatcgc
cttgaagcggccatcgaaatccttaaaaaatacaatctaaacgattgtcttatctacttg
tatgagcgtcaaggtgatatcgatgctgcgttcaatttatcattgaaattattacaaata
acgcccgaaggcatggccgaaaatcgtgcattagaattgtgcgcactttgttcacgttca
ttagatgtattatcgaatggcgatcgcgaaaagctctggttcaccttgatcaaaacagtt
ttatcgcgaaatgatttaaattcgataacgaaaagtgttttacatgcggccagcggtcat
gttgatctaaccaatttagtgcaattagtattgagttcgagcagtgaaaccggcaatttg
ggcgatatcaaacatttactggtcggaatgttggccaattcaaaatatgaaatactctta
caacaaacaactgcccgaattctaggtcatgatttacatcgaatgcttgcaaaagaaaaa
caaatcgcaatgcgtggcctatcaattaaatcgattaaatgtattttatgccgttcaaag
ctttataatcaacaggaatcgttaatttttggcatttgtggccatgcagcacatcacact
tgtgtacaagatatgtacaccgatccagaaaaaaaactccattgtccgcgttgcgataat
gaaatcaatgaaatgaaaccagttgaattggccaagccaaatgattgcttttatgaaaat
aatgccaatgatagttgtagtctcactttacaattagaagctccgccacgttcaatcggc
tga
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integrated database retrieval system
