Contarinia nasturtii (swede midge): 116346620
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Entry
116346620 CDS
T08003
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03013
Nucleocytoplasmic transport
cns03015
mRNA surveillance pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116346620
09122 Translation
03013 Nucleocytoplasmic transport
116346620
03015 mRNA surveillance pathway
116346620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116346620
03041 Spliceosome [BR:
cns03041
]
116346620
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116346620
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116346620
Spliceosome [BR:
cns03041
]
Complex C
Other components
EJC/TREX
116346620
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116346620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
Peptidase_U57
CAMSAP_CKK
DUF6839
Motif
Other DBs
NCBI-GeneID:
116346620
NCBI-ProteinID:
XP_031632636
LinkDB
All DBs
Position
Unknown
AA seq
393 aa
AA seq
DB search
MPNQEMDEVERAKVHDFGNMKFKPEIQNFIDKSHLKKPSNADVKCIHRFVDGFNIVCGAK
LNMDKSDVLVLATSQLLEPTKNIEILVICSSSDFANGIKKSYKELNVESKVYICSEKEDI
IIETLKAETPHTVIGTLDCISKLIEMKEIEWEHLKYLIWDEFDKISEPVGIRYALVKDIL
QKTPQIKRFMMFASREFGEEERNICKAILKHPIFVDNETKLILHGLRHYYIKTQEHEKVK
KILELLEAMNPDKAVIFVNSHAAEYKEIFSYQPKYEQFYQRILITTHLNAHNTKNIQGVK
MIINYDLPNDADAYIDRVNCVAMNRSTIITFVSNEDAEMLEKIQKRFDIKMTEVSEVTAV
VSWVYRFERLHCPPLSRDMVQVLYQKIKSITKK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaccaagaaatggatgaagttgagagagcaaaagtgcatgattttgggaacatg
aagttcaagccagaaattcagaattttattgataaaagtcatttgaaaaaaccatcaaac
gccgatgtgaagtgtattcatcgatttgtggatggatttaacatcgtttgcggggccaaa
ctaaatatggacaaaagtgatgtgctcgtgctagcaacctcgcagctattggaaccaacg
aaaaatattgaaatattagtcatttgttcctcttcagattttgctaatggaatcaaaaaa
agttacaaggaattaaatgtagaatcgaaagtttacatctgctctgaaaaagaagatatc
ataatcgagacactgaaagcagagacaccacacaccgttatcggcactcttgattgtatt
tcaaagcttattgaaatgaaggaaatcgagtgggagcatttgaaatacttaatttgggat
gaatttgacaaaatttcggaaccagtgggaattcgttacgcattagtcaaggacatatta
caaaaaactccgcaaattaaacgattcatgatgtttgcttcacgtgaatttggtgaagaa
gaacgaaatatatgcaaggcgattttgaaacatccaatattcgtcgataatgagaccaaa
ttgattttgcatggtttgcgtcattattacatcaaaactcaagagcatgagaaggtcaag
aagatattagaattgctggaagcaatgaaccccgataaagcagttatttttgtgaattcg
catgcagctgaatataaagaaatcttttcataccaaccgaaatatgaacagttttatcag
cgcattttgatcacaactcatttgaacgcacataatacgaagaatattcaaggagtcaag
atgattatcaactacgatttgccaaacgatgccgatgcatacattgatcgtgtgaactgt
gttgcaatgaaccgctcaacaatcattacattcgtttcaaatgaggatgctgaaatgttg
gaaaaaattcaaaagcgtttcgatatcaaaatgacggaagtttctgaagtaactgcagtc
gtatcctgggtttatcgattcgaaaggcttcattgcccaccactttctcgggatatggtt
caagttttataccagaaaataaagagtattacaaaaaaatga
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