Contarinia nasturtii (swede midge): 116346648
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Entry
116346648 CDS
T08003
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cns04040
]
116346648
Ion channels [BR:
cns04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116346648
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
116346648
NCBI-ProteinID:
XP_031632671
LinkDB
All DBs
Position
Unknown
AA seq
1254 aa
AA seq
DB search
MTNEANIFYKPLRRVSFCDNSEAKKESTMCDSTEMHIVTLNCDQPTNLSKSLRLRKWVTA
ATNYHHSAKFQFQRKNAIANDTVANARGSAGKGTELNDPNDYGVCLLIHSPYRILRAAES
GDLENFVRLYQGDNSRLTVADARGRSASHLAAAKNRVNILQYIHAQQGNMNAPDAAGNTP
LHLTVNDDAFDAMDYLLSIGVSANVLNEKKQSCIHLATELNKVTALKVMGNYRNIIDIQK
GGEHGRTALHLAAIYDHEECARILISEFGACPRKPCNNGYYPIHEAAKNASSKTMEVFFQ
WAESHGCTREEMISFYDSEGNVPLHSAVHGGDIRAVELCINSGAKICTQQHDLSTPVHLA
CSQGALEIVKLMFRMQPQEKKICLACTDAQKMTPLHCAAMFDYPEVVQFLVKEGADLNVL
DREYRSPLLLAASRGAWKTVLALIRLGAQISIKDINSRNVLHHVIMNGGRLDEFATEVSR
TQFNFQLTQLLNEKDNTGCSALHYASREGHIRSLENLIRLGACINLKNNNNESALHFAAR
YGRYHTVKQLLDSEKGTFIINESDGEGCTPLHISSMCGHTRVVQLLLNRGALLHRDHNGR
NPLHLAASSGYTQTMELLHSVHSHLLDQCDKDGNTPLHLATIENKPNAISLLLSMNCKLL
YNYMEMSAIDYAIYYKYPEAALAMVTHEERSEEVMMLKSDKHPCVTLALIASMPRVFEAV
QDKCITKANCKKDSKSFYIKYSLSCLQCPTMYAQMDEKTGEAVQISKPIPLPALNAMVTH
GRVELLAHPLSQKYLQMKWNAYGKYFHVTNLLIYTVFLSFVTIYASHLMQIVGMNEHVSS
ATQNFSDDEKPQAAKYVHTTYKPHTINPNQSFIDKQITVTPIMCVTSVAIIIYIVCSTLR
EFLQIYQQKWQYLFEPNNFVSWMLYISAGIMVSPVFNGGWISDCHFSAASLTVFLSWFNL
LLFLQRFDQVGIYVVMFLEILQTLIRVLMVFSILIIAFGLAFYIVLSKSMLSQEMSSSQW
AFTSIPMSLARTFSMMLGEMDFVGTFVVPYWRHELPLPISSFLLLCLFMILMPILLMNLL
IGLAVGDIESVRRNAQLKRLAMQVVLHTELERKLPQMWLEKADKMELIEYPNTQKCKLGI
FDSVLRKWFCNPFNDENNIDMGFETSEEILADEMEKQRRKLQSITTTLEHQHQMLRLIVQ
KMEIKTEADDVDEGVSPNDLRAPSAVNSFGAPTRWTSPRIRKKLKHAKSFNKSS
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgaagcgaatatattctataagccgttgcggcgtgtttctttctgcgataac
agtgaggcgaaaaaagagtcgacaatgtgtgatagtacggaaatgcacattgtaacacta
aactgcgatcaaccgacaaatctatcgaaatcactacgcctaaggaaatgggttacagct
gctacgaattatcatcattcagctaaatttcaatttcaacgaaaaaatgccattgcaaat
gatacggtggctaatgcaagaggatcagctggcaaaggaaccgaattaaatgatccaaat
gattacggtgtatgcttgctaatacattcaccatatcgcatcttacgggcagcagagtct
ggtgatttggaaaattttgttcgtttgtatcaaggtgataatagccgtttaacagtagca
gatgctcgagggcgctcagcatcgcatcttgccgcagcaaaaaatcgagtaaacatactg
caatacatacatgcacaacaaggaaatatgaacgctcccgatgccgctggaaataccccg
ttacatttgactgtgaatgacgatgcatttgatgcgatggactatttgctctcaattggc
gtaagcgcaaatgttctaaatgagaaaaaacagtcatgtattcatttggcgaccgaacta
aacaaagtaactgcattaaaagtgatgggcaattatcgtaatattatcgatattcaaaaa
ggtggcgaacacggccgcacggcactacatctagcagccatctacgatcacgaagaatgt
gcacgcattttgatttcagagtttggtgcttgtccccgaaagccttgtaacaatggctat
tatcctattcatgaagccgctaaaaatgccagctccaaaacgatggaagtcttctttcag
tgggcagagtcacatggatgtacacgagaagagatgatttcattttacgattcagaaggc
aacgttccactccatagcgccgtgcatggtggagacataagagcggttgaattgtgcatc
aattcaggggcaaaaatttgtacgcaacaacacgatttatcaactccagtacatttagct
tgctcacaaggagcattagaaattgtcaagcttatgtttcgaatgcaaccgcaagagaag
aaaatttgtcttgcatgcactgacgcacagaaaatgactccactccattgcgctgcaatg
tttgattaccccgaagttgtacaatttttggttaaagaaggtgctgatttgaatgttcta
gatagagaatatagatcgcctcttttgttggccgcgtcgcgtggtgcatggaaaactgtg
cttgcattaattcgactcggcgctcaaatctcaatcaaagacataaattctcggaacgta
ttgcatcatgtgattatgaatggcggtcgattggatgaatttgcaacagaagtatcacgt
acacagttcaattttcaattaacgcaattgcttaatgaaaaagacaacacaggttgctcc
gcgctgcactacgcgtcgcgtgaaggacatattcgttctttggaaaatctgatacgtttg
ggtgcctgcattaatttgaaaaataacaataacgagtcggcattacattttgccgcgaga
tacggacgataccatacagtgaaacaattgctcgactcggagaaaggaactttcattatt
aacgagagcgacggcgaaggctgcacacctcttcatatctcatctatgtgtggacataca
cgtgtggtgcaattgcttcttaatcgtggtgctctgttgcatcgcgatcacaatggacgc
aatccgctgcatttggcagcgtcgtctggttacacacaaaccatggaactattgcattcg
gtgcattcgcatctactcgatcaatgcgacaaagatgggaacactccactgcatctggca
actattgaaaataaaccgaatgcaatttcactgctattgtcgatgaattgtaagcttctc
tacaattatatggaaatgagtgctattgactatgccatttactataaatatccggaggct
gccttggccatggtaacacacgaagaacgatcggaagaagtgatgatgttgaaatctgac
aagcatccatgcgtaacgctggctctaattgcatcgatgccacgtgtattcgaagccgta
caagacaaatgtatcacaaaggcaaattgcaaaaaagactcaaagagcttttacatcaaa
tactcgttgtcgtgcttgcaatgtccaacgatgtacgcgcaaatggatgaaaaaacgggt
gaagcagttcaaatatcaaaaccaattccattgccagcgctcaatgcgatggtaacacat
ggtcgggttgaactattggctcatccactcagtcagaaatatctgcaaatgaaatggaat
gcttacggaaaatactttcacgtgaccaatcttctgatttacactgttttcttgtcattt
gtcaccatttatgcatcacatctaatgcaaattgttggtatgaatgaacatgtgtcatct
gcaactcaaaattttagtgacgacgaaaagcctcaagctgcgaaatatgtgcataccact
tataaaccacatactataaacccaaatcaaagtttcattgacaaacaaatcactgttaca
cccataatgtgtgtaacgagcgttgcgattattatttacattgtatgcagcacattacgc
gaattcctccaaatttatcaacaaaaatggcagtatttattcgaaccgaacaactttgtc
tcatggatgttgtacatttctgctggcataatggtgtcgccggttttcaacggcggttgg
atttccgattgccatttttcagctgcatcacttacagttttcttatcatggttcaattta
ctactgtttttacaacgatttgatcaagttggcatttacgtagtgatgtttttagagata
ctccaaacgttgatccgagtactaatggtattttcgattctgattattgcattcggtttg
gccttttatattgttttgtcaaaatctatgttatcacaagaaatgtcatcgagtcaatgg
gcgtttacgtcgatcccgatgtctttggcacgtacattttcaatgatgctcggagaaatg
gattttgtcggaacttttgttgtaccctattggcgtcatgagctccctttaccaatttca
tcatttttactattatgtcttttcatgattttgatgccaatcttattgatgaatctgctc
atcggtttggcggtgggtgatattgagtcagttcgacgaaacgcacagcttaagcgattg
gcaatgcaagtcgtacttcataccgaacttgaacgtaagctaccgcaaatgtggttggag
aaagctgataaaatggaattaatcgaatatccaaacactcaaaagtgcaaattgggaata
tttgatagcgtacttcgtaaatggttctgtaatccattcaatgatgaaaataatattgac
atgggcttcgaaacatccgaagagattttggctgatgaaatggaaaagcaacgccgcaaa
ttgcaaagtatcaccacaacgttggaacaccaacatcaaatgctgagacttatcgttcag
aaaatggagataaaaactgaagcagatgacgtggatgaaggtgtatcgccaaatgacttg
agagctccctcagcagtcaattcatttggcgcaccgacacgatggacatcaccacgcatt
cgcaaaaagttgaaacatgcaaagagctttaataaatcttcttaa
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