Contarinia nasturtii (swede midge): 116346934
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Entry
116346934 CDS
T08003
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03018
RNA degradation
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116346934
09123 Folding, sorting and degradation
03018 RNA degradation
116346934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116346934
03041 Spliceosome [BR:
cns03041
]
116346934
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116346934
mRNA degradation factors
5'-3' decay
Lsm complex
116346934
Spliceosome [BR:
cns03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116346934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
116346934
NCBI-ProteinID:
XP_031633114
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MASALDSYVNNTVSIITADGRNFVGTLKGFDQTINIILDESHERVFSTANGIEQVVLGLH
IIRGDNIAIIGQIDEAIDSRLDFQAIRSEPLGPVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcgcttgattcgtacgtaaataatactgtatcaataataacagccgatggt
cgaaattttgtgggaactctaaagggattcgatcaaacgattaacataatattggacgaa
tcacacgaacgagttttctcaacagcaaacggaattgaacaagtcgttcttggactgcac
attattcgtggcgacaatattgcaatcattggacagattgacgaagcaattgatagtaga
ctagatttccaggctatccgtagtgaacctcttggacctgtggttcattag
DBGET
integrated database retrieval system
