Contarinia nasturtii (swede midge): 116347092
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Entry
116347092 CDS
T08003
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c-like isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116347092
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116347092
5.6.2.5 RNA 5'-3' helicase
116347092
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116347092
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
FHA
Viral_helicase1
AAA_19
UvrD-helicase
AAA_30
Yop-YscD_cpl
AAA_25
SLFN-g3_helicase
PIF1
UvrD_C_2
ResIII
AAA_7
AAA_16
DEAD
Motif
Other DBs
NCBI-GeneID:
116347092
NCBI-ProteinID:
XP_031633385
LinkDB
All DBs
Position
Unknown
AA seq
1138 aa
AA seq
DB search
MIRATIDTKMVKSNKWNLIRLKQDRVFFLNVGKSTIGRNKEADVCTPSNICSRNHCFITL
DAINDCVTLINQSTNGTYVNDALIETEPRSLKHGDIIGIGCTESIFEVEPKEKWSGYYIY
KLVNNTLRENGSDNVINLISDDEEDVQPQIPNENQAAQRVENQVDNEDNEVNEVNDDNDD
NDIIYSQQVMLEIKKEVNNTDEIDDDYSILIDSDDSDDGNESWSHRLSQNQDFVIKKVTE
QQQNNKRKSVKEIEPIPLLAAKRCRKNSLPATAKQILCPVETMPRARNDLYDQPSTSDGR
TRRNDDDNAKSIKENEKPKPFVDKFDPFVAKQKVDEAKKNFDEALKQVATSSTKKRIAHK
PKIHPKNGQLVSILKKTVREEGKSGRRGRRVQFANGSPTIREYTPDRDDIGEIIASPVKS
MQAHGMDSLSSFQNDPLHNIITDVTEWRTDWISQRNTTPPINGVNFVVAPLSLSYPNFES
YKNTLTPLLKHELWSSIQAENRHQNRLEAVINAMSLAKRANRNRYVFHVQLVGEGSNATS
NTGDFVCVETNNHPNFFAYVTNSRSTVSGYSKTTYLTLEASEAVSKLKHGESTTIYIKPI
ANIRTELKLFNAIFYLNQTPFKNLILNPKLYKPPTIPNNITKEFSYSGYDVLNKEQLHIM
KSIYNKCMSKHPTLSLIEGPPGTGKTRVIVSIILQLLYGKDMTRKLRVLVLTSSNAAVDI
IARRLLYIRDKMNDKIEKQRILNVVRFGVLNSMHPDVRRIAPQNLVATPTSPRNPEMKKL
HADKKKLLEDNDSLRKSQHIADKEKIKDNEKRIKSIDAALEKMGNSSIFEYDNIRDVMTN
ARVVCSTLSSCINLKQYIAKFDVCFIDEASQCTEPWTLVPLQYAVSSFILIGDSNQLNPV
VLSNVCRSNSLDRSLFARLYDTFGSSSSRSLITYTMTTQYRMHPEICKFPNTFYKNRLIS
AGNTKEPFDLQPYSVFSLNYLQSNSDMINYYNSEEATFIIDMLKVMVKHADPKKYTYGII
TPYAQQRSEIQRKMGTSQTLAGFNIQVNTIDSYQGQERDIIILCTTRTTGIGFLANLQRL
NVALTRAKKCLVICGNFTSISHTNVWKHLLADAKDRHKFHNIPSKYDFQQIADLLVKK
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgataagggccactattgacacaaagatggttaaaagcaataaatggaatcttatccgg
ctaaagcaggacagagtgttttttttaaatgtaggtaagtcgacaatcggccgaaataaa
gaagcggatgtttgcacaccgtctaatatatgcagtcgcaatcattgttttatcacactt
gatgcaataaatgactgtgttacacttatcaatcagtcgacaaacggtacatatgtaaat
gatgctctaattgaaaccgaaccacgtagtttgaaacacggagatatcatcggaattgga
tgtacagaatcaatttttgaggttgaaccaaaggaaaagtggagcggttactatatatac
aaacttgttaacaatacattaagagagaacggcagcgataatgtaattaatttaataagc
gacgatgaggaagatgttcaaccgcaaattccaaatgaaaatcaggctgcccaaagagtt
gaaaaccaagttgacaacgaagacaatgaagtcaatgaagtcaacgatgacaatgatgac
aacgatattatttattcgcagcaagttatgttggaaataaaaaaagaggtgaataacacc
gatgaaatcgatgatgattattcgattttaattgatagcgatgactcggatgatggtaat
gagagctggtcacatagattatcgcaaaatcaagattttgttattaaaaaagtaacggaa
cagcaacaaaataataagcgaaaatcggtcaaagaaatcgaacccattccattgttagca
gcaaaaagatgccgaaaaaactcattgccagcaactgccaaacaaattttatgcccagtg
gaaacaatgccaagagcacgtaatgacttatatgatcagccatcaacgtcagatggaagg
accagaagaaatgatgatgataatgcgaaatcgattaaagagaatgaaaaaccaaaacca
tttgtcgataaatttgatccatttgttgccaaacaaaaggtagacgaagctaaaaaaaat
ttcgacgaagctctcaaacaagtagcaacttcatcgacgaagaaacgtattgcacacaaa
ccaaaaatccatccaaaaaatggtcaactcgtttcaatattaaaaaaaacagtgcgcgaa
gaaggaaagagtggaagaaggggccgtagagtacaattcgcgaatggatcgccgacaatt
cgtgaatacacaccggatagagatgatattggtgaaattattgcatcacctgtcaaatca
atgcaagcacatggaatggatagtttaagcagctttcaaaacgatcctctgcataatatc
atcacagacgtcacagaatggagaaccgactggatatcacagagaaatactacgccacca
ataaacggtgttaattttgttgtagcacctttatctcttagctacccgaatttcgaatca
tacaaaaacacccttacgccgcttctcaaacatgagctgtggtcatcgattcaagctgag
aatcgtcatcaaaaccgactagaagcagttatcaatgcaatgagtcttgccaaaagggcc
aaccgaaatcgatatgtattccatgttcagcttgtcggtgaaggctcaaacgccacatca
aatacgggtgatttcgtttgtgttgaaacaaataatcatcccaatttttttgcctatgtc
acaaatagtcgttcaacagtctcaggctactcaaagacaacttatctcacactggaggca
tctgaagcggtatccaaattaaagcacggcgaatcaactacaatatacataaaaccaatc
gctaatattcgaaccgagttaaagttgttcaatgcaattttttacttgaatcaaacacca
tttaaaaatcttattctcaatccaaagttatacaaaccaccaacaattccgaataatatt
acgaaagaattttcatattcaggctatgatgtattgaacaaggaacaattgcatattatg
aaatctatatacaataagtgtatgagtaaacatccaactttatcattgattgaaggaccg
cccggcacaggtaaaaccagggtcattgtatcaattattctgcaacttctttacggcaaa
gacatgacaagaaaattacgagtcttagttttgacatccagtaatgctgccgtcgacatc
atagccagaagattgctatatattcgtgataaaatgaacgacaaaattgagaaacaaaga
attctgaatgtagttcgattcggtgttctgaatagcatgcatccggacgtacgaagaatt
gcaccacaaaatctagtcgcaacaccaacatcaccacgtaatcccgaaatgaagaagctc
cacgctgacaaaaagaagcttctagaggataatgattcgttgagaaaaagtcaacacatt
gctgacaaagaaaagattaaagacaacgaaaaacgcataaaatcgatagacgctgcattg
gaaaagatgggcaattcatccatatttgagtatgataacattagggatgttatgacaaac
gctagagttgtttgttctacactcagtagctgcatcaatttaaaacagtacattgcaaag
ttcgacgtatgttttattgatgaagcgtctcagtgcactgaaccgtggacattggttcca
ttacagtacgctgtgtcatcgtttattttaattggagattcaaatcaactgaatccagtg
gttttgtcaaacgtgtgtcgatctaatagcttagatcgatcgttgtttgcacgattatat
gatacatttggaagtagcagttcgagatcactaatcacatacacgatgacaactcaatat
cgaatgcatccggaaatttgtaaattcccaaatactttctacaaaaatcgattgatttcg
gccggaaatacaaaagaaccctttgatcttcagccctactctgtattcagtttaaattat
ttgcagtcaaatagtgatatgatcaattattataattcagaagaagccacttttattatt
gatatgttaaaagtgatggtcaaacatgctgatccaaagaaatatacatatggcataatt
acgccttatgcacaacagagatcggaaattcaaagaaaaatgggaacatcacagacgctt
gccggtttcaatattcaagtaaacacaatcgactcttatcaaggccaagaacgggacatt
ataatactgtgtactacacgaacgactggcattggatttttggcaaatttgcaacgtttg
aatgtggctttgacgcgtgccaaaaaatgtttggtgatctgcggaaattttacctcaata
tcgcataccaatgtatggaaacatcttttagcagatgcaaaagatcgacacaaattccac
aatatcccatcaaaatatgattttcagcaaattgctgatttgttagtaaaaaagtaa
DBGET
integrated database retrieval system
