Contarinia nasturtii (swede midge): 116347164
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Entry
116347164 CDS
T08003
Name
(RefSeq) protein Optix isoform X1
KO
K19473
homeobox protein SIX3/6
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cns03000
]
116347164
Transcription factors [BR:
cns03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
116347164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
FAM199X
HTH_3
Motif
Other DBs
NCBI-GeneID:
116347164
NCBI-ProteinID:
XP_031633516
LinkDB
All DBs
Position
Unknown
AA seq
511 aa
AA seq
DB search
MAVGRGTGASPPVPLQTTPTNPVAASTPHLNQNVAAAAAAAAAAAAHHPHPILAPSPLFA
LPTLNFTASQVATVCETLEESGDIERLARFLWSLPVSFPNLRELEHSEAVLRARAIVAYH
TGQFRELYTILERHKFTKHSHGKLQAMWLEAHYHEAEKLRGRPLDWSNSVFPGPVDKYRV
RKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNW
FKNRRQRDRAAAAKNRMNQPMSGSGGTSLRSRQTDNSSPIPSDDSDSDISLGTHSPVPSS
LSLQHSPGSTSGGGNDDRLMHDDLQRDREKDFRSFSLGGFSFDAHSPAMAGAFSRFLPTL
PYPFVGGDNSPPISTHSPPTAIAMTNIGNGNRIPLSTRDSRDSIDYMNIPTVVRPQPQLP
SSATIAAGSHLTNGTATTLSPLRIRVSSPNRINSTDMTSGLGSTTQMPTHRTNGIVRIVG
GNNTSSTIRNPTSGAPTLHRPFSPSPQPKDT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcagttggtagaggaacaggagccagtcctcctgtgccgttgcaaacaacaccaacg
aatccagtcgcggcatccaccccacatttaaatcaaaatgtagctgctgcagctgcagct
gcggctgccgctgctgctcatcatcctcatccaatattggcacccagtccactgtttgca
ttgccaacgttaaattttacggcgtcacaagtggcaaccgtttgtgaaacgctcgaagaa
tcgggtgatattgaacgtttggccagatttctatggagtttaccggtatcatttccaaat
ttacgtgaacttgaacattcagaagctgtattaagagccagagctattgttgcctatcac
actggtcaatttcgtgaattatacacaatcctagaacgtcataaattcacaaagcattca
catgggaaattgcaagcgatgtggcttgaagcgcattatcacgaggcggaaaagttgcgt
ggccgacctttagattggtcaaattctgtttttccaggccctgtcgataaatatcgtgtg
cgtaagaagtttccattgccacggacgatctgggatggtgaacaaaagacacactgcttt
aaagagcgtacacgaagccttctgcgagagtggtatctgcaagatccgtatccaaatcca
acgaaaaaacgtgaactggctcaggcaactggtttaacgccaacgcaagtaggaaattgg
ttcaaaaatcgaaggcaacgtgatcgagcggctgctgcaaaaaacagaatgaatcaaccg
atgtctggttcgggcggcacatcattgcggtcacgtcaaaccgataattcatcgccaata
ccatcagacgattcggattcagatatatcactgggaacacattcgccggtaccgagcagt
ttgtcacttcaacacagtcccggttcaacgtcgggcggtggtaacgatgatcgtttaatg
catgacgatttgcaacgtgatcgtgagaaagattttcgaagtttttccttgggtggattt
tcatttgatgcacattctcccgctatggctggagcatttagtcgctttttacccacattg
ccttacccatttgttggtggtgataattcaccgccgattagtacgcattcacctccgaca
gcaattgcaatgacaaacattggtaacggcaatcgaattccgttgagcacacgtgattca
cgcgattcaatcgattatatgaatataccaacggttgtaagacctcaaccacaactacca
tcttcagctaccattgccgccggcagtcatttaacaaatggtacagcgacaacattgtca
ccgcttcgaatacgtgtcagttcaccgaaccgcatcaattcaactgatatgacatcgggt
ttaggatcaacaacacaaatgcccacgcatcgtacaaatggaattgttcgaatagtcggt
ggtaataatacatcaagtacaatacgaaatccaacatcgggagcaccgacactgcatcga
ccattttcaccgtcgccccagcccaaagacacgtga
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