Contarinia nasturtii (swede midge): 116347546
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Entry
116347546 CDS
T08003
Name
(RefSeq) probable ATP-dependent RNA helicase CG8611
KO
K14806
ATP-dependent RNA helicase DDX31/DBP7 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cns01009
]
116347546
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cns03009
]
116347546
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116347546
Protein phosphatases and associated proteins [BR:
cns01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116347546
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116347546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116347546
NCBI-ProteinID:
XP_031634026
LinkDB
All DBs
Position
Unknown
AA seq
904 aa
AA seq
DB search
MDLSLNISTSASSSKSTPKLKLPTVGTKRKSNIGGFDFNFVKNDKVKAIVARKRPPQLLL
AKKSAANKASTENLISKPIQKPVDNSKQTQNKVNTPQKSTPNKKNDDIDSLLSMAKVKQP
EDEASLSLNIYTSFDLTQMSAKRFGEKKKKLSRNERKERVMQRRIDEARGKQEKKTPNAF
AKQSNVEAGPKINLQKNTESTNNVERRPKMFEKKPENKPMRKAENIFKNTPDVPVVGQRF
VKPVNEIVFTGLPMSSIGLHPHLVKTLADLFGITELTNVQQRAVPIALEGRDILVRSQTG
SGKTLAYALPIVQQLQDIKPKINRNDGILALVIVPTRELAIQTLEVFIKLLKPFTWIVPT
YITGGEKRKSEKARLRKGVNILIGTPGRICDHLLHTESFKIDKVKYLVLDEADRLFECGY
EKDVKVIVDALNKEPEAKNPFAKSNEVEEPQVKRISNVQTSLLSATLSSAVRQLGNLALK
NPLFIDTSDKKDIELPKTIPIAGQSEDSIEAIEESLANENIVIPEKVTQKYILVPPKLRL
VTLTGLISKETCDGSKSSKILVFLATENLVDYHYDLMTETLTKKVVDSDDEDDGDDDDNM
ALPDGESDLEDEDGLLDKVRTKSKKKFKERPLLADVKFFKLHGSLTQHERSAIFKAFKEA
KSGVLLTTDVTARGIDVPAVDLVVQFSSPHKLADYVHRVGRTARAGLSGRAILFLCPNEV
EFIRTLESKRIRIAQDDYKTYLKAIQDNSELVTGTLEEMASEQQRKFELLVADDKEIYEK
ACKAFVSWLRYISSFPKDLRHIFNVKNTHMGHYAKSLALREPPKSFTKEFSKPKAPLPQN
RLTYTDRSTTKKSERVTDSKTVKKNGMKRPSTTMTGLGKFVSKSISLSTSEFDSGLPPMK
KRKN
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggatctgtcattgaatatatcaacatcagcgagtagtagcaagtcaactccaaaacta
aaactaccgacagtgggaacgaagcgaaaatcgaatattggtggttttgattttaatttc
gtgaaaaatgacaaagtcaaagcaatcgtagctcgaaaacgaccgccacaattattgttg
gccaagaaatcagcagcaaataaagcgtccactgagaatttgatatcgaaacccattcaa
aaaccggtagataattcaaaacagacccaaaacaaagtgaatacaccacaaaaatcaacg
ccaaacaagaaaaatgatgatatagattcacttttgagtatggccaaggttaaacaacca
gaagatgaggcatcgttgagtctgaatatatacaccagctttgatttgactcaaatgtca
gcgaaaaggtttggcgaaaagaaaaagaaattatcacgaaatgagcgcaaagagcgagtt
atgcaacgacgaatcgacgaagctcgtggtaagcaagagaagaaaacaccaaacgcgttt
gcaaaacaatcgaatgtcgaagctggcccaaaaataaatcttcagaaaaatacagaatca
actaataatgtggaaagaaggccgaaaatgtttgagaaaaaacccgaaaacaaaccgatg
cgaaaagcagaaaatatattcaaaaatactccagatgtacctgtagttggacagcgtttt
gttaaaccggtcaatgaaattgtcttcaccgggttgccaatgagttcgattggtttacat
ccacatttggtgaaaacactagcagatttatttggaataactgaactaacgaacgttcaa
cagcgagccgttcctatcgcgctagaaggtcgtgatattttagttcgatcacaaaccgga
tctggcaaaacactggcctatgctttgcctattgtacagcaactacaagatatcaaaccg
aaaataaatcgaaacgatggcattcttgcgttggttatcgttccaactcgcgaattggcc
attcaaacgctcgaagttttcatcaaacttctgaaaccgttcacatggattgtgccgact
tatataacgggcggtgaaaagcgaaaatcagagaaagcccgacttcgaaaaggagtcaat
attttaattggaacacccggaaggatttgtgaccatttgctacacactgaatcatttaaa
atagataaggtcaagtatttagtattggatgaagccgatcgactgttcgaatgtggctat
gaaaaagatgtcaaagtcattgttgacgctctcaacaaagaaccagaagcgaaaaatcca
ttcgcaaaatccaatgaggttgaagaaccacaagtaaaacgaatatcaaatgtacaaact
tcactgttgtctgcgactttgtcatcggccgttcgtcaattagggaatttggcattgaaa
aatccactttttatcgataccagcgataagaaggacattgaattaccgaaaacaattccg
attgctggccaaagcgaagactcaattgaagcgatcgaagagagtttggccaatgaaaat
attgttattccagagaaagtcacacaaaaatatattttagtgccaccaaaactacgtttg
gtcactttaacaggattgatttcgaaagaaacatgcgatggcagtaaatcgtcaaagatt
ttagtatttttggccaccgaaaatttagtcgattatcattatgatttaatgaccgaaaca
ttgaccaagaaagtggtcgactcagatgatgaggacgatggagacgatgatgacaatatg
gcacttccggacggtgagagtgatttggaggatgaagatggattgttggataaagtaaga
acaaaatcgaagaagaagttcaaagaaagaccgttgctagctgatgtgaaatttttcaaa
cttcatggatcgttgacacaacatgagcgcagtgccattttcaaagcgttcaaagaggca
aaatctggtgtattgctgacaacggatgtgaccgcacgtggaattgatgtgccggcggta
gatttggtggttcaattttcatcgccgcataaattggccgattacgtgcatcgtgttggc
cgaacagcccgtgctggactaagtgggcgcgccatactatttttatgtccaaatgaagtc
gaattcattcgaacactggaatcaaagcggattagaattgcccaagatgactacaaaacg
tatttaaaagccatccaagataatagcgaattagtgacgggaacattagaagaaatggct
tctgaacaacagcgtaaattcgaactactagtcgccgacgacaaagaaatctatgagaaa
gcttgtaaagcattcgtgtcatggttacgttatatatcatcgtttccaaaagatttgcga
cacattttcaatgtgaaaaacacacacatgggtcattacgcaaagtcgcttgcattgcgc
gaaccaccaaaatcatttacgaaagagtttagcaaaccgaaggcaccgttgccacagaat
cgattaacctatacggacagatcgacaacgaaaaaatcggaacgagtaactgattcaaaa
actgtgaaaaagaatggaatgaaacgaccgtcaacgactatgaccggtctcggcaaattc
gtatccaaatcaattagtttatcaacatcggaattcgacagtggcttaccgccgatgaaa
aaacgaaagaactaa
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