Contarinia nasturtii (swede midge): 116347644
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Entry
116347644 CDS
T08003
Name
(RefSeq) zinc finger protein swm
KO
K13192
RNA-binding protein 26
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cns01009
]
116347644
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116347644
03041 Spliceosome [BR:
cns03041
]
116347644
Protein phosphatases and associated proteins [BR:
cns01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116347644
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116347644
Spliceosome [BR:
cns03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116347644
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup35_RRM_2
RRM_Nup35
PWI
RRM_1
zf-CCCH
zf_CCCH_4
Rx_N
Motif
Other DBs
NCBI-GeneID:
116347644
NCBI-ProteinID:
XP_031634192
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
MQINHPEELKAWLTVVLDPLCEADPAALARYVLALLKKEKPLRDLQQCMNEQLDVFLGVQ
TKPFLTRLFEMIATEEYLNETAIDRDIAIEASNSEQVQSSQETQSSSLVNESDLVAAGLD
PARLQSVARNMKGTPRPVVPNDQNNANENDPDYINSSPLGSSITKLRDVSPISPVKHGND
NENHRKEQRRRSARSRSRSRSPRGSLRRGGEREKYGSRGHSYRNKSPANSNPFRRNSGHE
PRSPKYYKRSDSPPAVDDEECKGARSLSPQPPKKNDRCRDFDEKGYCMRGETCPWDHGVN
PVVLEDINNPTLMTIQAPHRSAEYNPDAPEIWAQGGSFLNGPNRTGPPNNAPLNSFQRMP
TTAAYRVAPPFPFPPNAGTTPLQRELISVPVVEANSGGDISASQKRRYEPEDTVAVAEGP
TKRKLPINSRLGPPNRVGLQNNCSLELRKVPRGLNSIAHLNNHFCKFGKIVNIQVSYEGD
PEAAIVTFSTHAEANVAYRSTEAVLNNRFIKVFWHTPGTNAAGTVDGNHNATPNANSNVN
ASGNAKEDNTINSFGRKSNQYSLNNTVPANPTPASTEFTKSGGNVNAANNNASNASSNAT
FTKSTTAPTVIPPASALTTNRNRNSRITRTAPEAIRKKKEEQVKAAVQLAHGLHKRKHEL
LQGYLKQMRTCLELVEKMDSTDPQRTTLLTTVKSLQNNIDNLNKEIASDQAQITAQIQPA
QHPVKAHPFIKSKELQKKELLDIELELIAQQQDGNDTTEIQKRLEELQKTLGTASKQIPF
PPTRSLRVRPAPPGSTSFDRRPTTILVAGFSSDECDAVLGHFKHFGEITKNDIDKTTPYL
KLTYATRLNAEQAMLRGRRFNDKQLQMSWFVQNAEPPKIATEEELLDDTVNDDNLTSEVR
LEDEEDDEEAEDRSWRR
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcagataaatcatccagaagaattaaaagcatggctgacagtcgttctagacccatta
tgtgaagctgatccggccgccttagctcgttatgttttggcattattgaaaaaggagaaa
ccgctaagagatctacagcaatgtatgaacgaacaattggatgtatttttgggtgtccaa
acaaagccatttctaactcgtttattcgaaatgattgctactgaagagtatctgaatgaa
actgccatagacagagatatagcaattgaagcatcaaattccgagcaagtacaatcatct
caagaaacacaatcatcgtctttagtcaatgaatccgatttggtggctgctggtctcgat
ccagctcgtctacaaagcgtagctcgtaatatgaaaggaacaccacgtcctgttgtacca
aatgaccaaaataatgctaacgaaaacgatcccgattacattaattcatcaccgcttggt
tcgtcaataacaaaattgcgtgacgtgagtccaataagcccagtaaaacatggaaacgac
aatgaaaaccatcgaaaagagcaaagacgtcgttcggctcgttcgcgaagccgttcaaga
tcgccacgtggctcattacggcgtggcggtgaacgtgagaagtacggttccagggggcat
tcatatcgaaataaatcaccggccaactcaaatccatttcgacgaaattcaggccacgaa
ccaagatcacctaaatactataaacgctctgattcaccaccagccgttgatgatgaggaa
tgtaaaggtgcccgttcgctgtcaccgcaaccaccaaagaaaaatgaccgatgcagagat
tttgatgagaaaggttattgcatgcgcggtgaaacgtgtccatgggaccatggagtgaat
ccagttgtcttggaagacattaacaatccaacgctgatgacaattcaagcaccgcaccgt
tcggccgaatataatccagatgcaccggagatttgggctcaaggtggcagttttttgaat
ggtccaaatcgtaccgggccaccaaacaatgcaccattgaattcatttcaacgaatgcct
acaacggctgcatacagagtagcaccgccatttccatttccaccaaatgctggtacaaca
ccattgcaacgtgaactcatctctgtaccagtggttgaagccaattcaggcggtgacatt
tcggcaagccaaaaacgacgatacgaaccagaagatacggttgccgttgctgaaggaccg
accaaacgtaaacttccaatcaatagtcgcttaggtccaccaaatcgagtcggattgcag
aataattgttcacttgagttacgaaaagttccacgtggtctaaattcgatcgcccatctt
aacaatcatttttgcaaatttggaaaaattgttaatattcaagtttcgtatgaaggagat
ccagaagcagctattgtaacattttcaacgcatgctgaagcaaatgttgcatatcgaagc
accgaagctgtgctaaataatcgttttatcaaagtattttggcatacacccggcacaaat
gcagctggtacagtcgatggcaatcacaatgcaacgccaaatgccaattccaatgtaaat
gccagcggaaatgcaaaagaagacaacaccatcaatagctttggacgaaagagcaatcag
tatagtttgaacaatactgtgcccgctaatccaacgccagcttcaacggaattcacaaaa
tccggtggtaatgtgaacgcagccaataataatgcatcaaatgcatcgtcaaatgcaaca
ttcacgaaatcaacaaccgcaccaacggttatacctcccgcatccgccttgacaactaat
cgtaatcgaaacagtcgcatcaccagaaccgcacccgaggccatacgaaagaaaaaggag
gaacaggtcaaagcggccgttcaactggcacatgggcttcacaagagaaaacatgaatta
ttacaaggttatctgaaacagatgcgcacttgtcttgaattagtcgaaaaaatggacagc
acagatccacaacgtacaacactgttgaccacagttaaatcgttacaaaataacatcgat
aatttgaataaggaaattgcatcggatcaagcacagataactgcacaaattcaaccagcg
caacatccggttaaggcacatccgttcatcaagtcaaaagaacttcaaaagaaggaattg
cttgacattgaacttgagctgattgctcagcaacaggatggaaatgatacgaccgagatt
caaaaacgtttggaagaattgcaaaaaactttgggcacagcatccaagcaaatcccattt
ccaccaacacgaagtttacgcgttcgcccggcaccacccggttcgacaagctttgatcgt
cgaccaactacgattttagttgctggattcagttcagatgaatgtgacgccgttttggga
cattttaagcacttcggtgagatcaccaaaaatgatattgataaaacaacgccatatctg
aaattgacttatgcaacaagattgaacgccgaacaggcaatgctacgtggacgacgtttt
aacgataaacaattacaaatgtcctggtttgtacaaaatgctgagccaccaaagattgca
accgaggaagagttactggatgatactgtaaatgatgataatcttacatccgaagtacgt
ttggaggacgaagaggacgacgaggaagcagaagatcgctcatggcgccgttaa
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