Contarinia nasturtii (swede midge): 116347954 Help Entry 116347954         CDS       T08003                                  Name (RefSeq) 3'-5' RNA helicase YTHDC2-like   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism cns  Contarinia nasturtii (swede midge) Pathway cns03018   RNA degradation Brite KEGG Orthology (KO) [BR:cns00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     116347954  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cns03019]     116347954    03012 Translation factors [BR:cns03012]     116347954 Enzymes [BR:cns01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      116347954 Messenger RNA biogenesis [BR:cns03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      116347954 Translation factors [BR:cns03012]  Eukaryotic type   Initiation factors    Initiation associated factors     116347954 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD HA2_C Helicase_C HA2_N nSTAND3 ATPase ResIII AAA_19 AAA_22 DUF6564 AAA_16 AAA_29 ABC_tran PhoH RhoGEF67_u2 NACHT Motif Other DBs NCBI-GeneID:  116347954 NCBI-ProteinID:  XP_031634638 LinkDB All DBs Position Unknown AA seq 798 aa AA seqDB search MMFLGDDQRFQQFNLKLNLVSSPAEMLDKTNIYRIRFRLVITPKHGVLVFKQCKTLILRN GQVEITGEYTKNTIMLLAIKPNGPSFYNVLKIFAAHDGNIDLNRFNGYKGYIGIDVSENK TQSFVDKCIDGYESSLKPTKFDKRLYRFDDSNPLSTFKEQRINTTATEQHGIEPNDDWSS SDEGAMGGEVQNTDSPQIKLTEMTVDKLTEVNFMKVRESLPIATFRRDILASIERNRVII ISGETGSGKSTQVPQFLMEEATRNGMACRIILTQPRRIAAYTVAKRISVERGDEHGISVG HQIRLEKCRKAETNLIVKTSGYLLQRLIGTKSSDAYKNITHVILDEVHEREINTDLILIA ITQVMILMSATLEADQFSEYFNNCPKINVPGRLFNVSCFYLDEVLYRTGFKTDEMKIYIE DTMHCESGQEQLLLAYNSTFNDDIIDFDLLVHVIDHIHSHTACDGSILIFLPGYHDIITL HDLLEIKFEGKENFRLFILHSCVEEENVFNPLPNGTRKIIISTNLAETSVTIDDVVYVVD VGKVKEHNYDSVTESTCLDTVDISKACTKQSSGRAGRVREGCAYRLYSIDKYEKMASYTT PDMLRMSLLEICLKAKLLADGSSIKQFLAEAIQPPSPQKVNNSIEILIKINALEPNEKIT QLGSHLAHMPVNCQLGKMILYSIFLQCVDPVLTIVSALSVKSLYMLRKKKKDDCESNNEF ENSNATNGFSDHQTILKTCEAWCNDLSKRSMQTIMGLRKLIMNHLKMAKYIDDDSKLNEN ASKWEIVKSCLVAGMCRK NT seq 2397 nt NT seq  +upstreamnt  +downstreamnt atgatgtttttgggagacgatcaacggtttcaacaattcaatctaaaattgaatttagta tcgtcacccgcagaaatgctagataaaacaaacatttatcgcattcgattccgtttagtc ataacaccaaagcatggagttttggtctttaaacaatgtaaaacactgattttgcgaaat ggccaggtagaaataaccggcgaatatactaaaaacacgattatgcttctagcaattaag ccaaatggaccaagtttttacaatgtattgaagatttttgctgcacacgatggaaatatt gatttgaatcgtttcaatggatacaaaggatatattggaatcgacgtatccgaaaataaa acacaatcatttgttgataagtgcattgacggttatgaatcatctttaaaacccacaaaa ttcgataaacgattatatagatttgatgattcaaatccattatctacattcaaagaacag cgcattaatacaactgcaacagaacaacatggtattgaaccaaatgatgactggtcgtca agtgacgaaggagcaatgggtggtgaggtacaaaatacagatagtccacaaatcaaactg acagaaatgacggtcgataagttaacagaagtcaatttcatgaaagtgcgcgagtcattg ccaatagcaacatttcgtagagacattttggcatcaattgaaaggaatagagttattatc atttcgggggagacgggatcaggaaaatctacacaagtgccacagtttttgatggaagaa gcaactagaaatggtatggcatgccgaatcatcttgacacagcctcgccgcattgccgcc tacacggtagccaaacggatttcggtagagagaggcgatgaacacggcatttccgttggg caccaaattcgcttggaaaaatgtcgcaaggcagaaacgaatttaatcgtgaaaacgagt gggtatttactgcaacgtttaattggtacaaagagtagtgacgcatataaaaatattact catgtgatactggatgaagttcatgaaagggagataaacaccgatctcattctaatcgcc ataacccaagtcatgattttgatgtcagccacgctagaagctgatcaatttagtgaatat ttcaacaattgtccaaaaataaacgtccctggacgtttatttaatgtaagttgtttttac ttggatgaagttttgtaccgaaccggtttcaaaaccgatgagatgaaaatatatattgaa gatacaatgcattgtgaaagtgggcaagagcaattacttcttgcttacaactcgacattc aatgacgacataattgatttcgatctactggtccacgttatcgatcatattcatagccac actgcttgcgatggaagcattctcatctttttaccaggataccatgacatcataacatta cacgatttgttggaaattaaattcgaaggcaaagaaaactttcgattatttattcttcat agctgtgtcgaagaagaaaatgttttcaatccattgccaaatggaacccgaaaaattata atcagcacaaatcttgcagaaacatcggttacgattgatgatgtggtttacgttgtcgat gtgggcaaagtaaaagagcacaactatgattcggtcacggaatcaacttgcctggacacc gttgatatttcaaaggcatgtactaaacaaagtagtggacgcgccggtagagtgcgagaa gggtgcgcttatcgattatactcaattgataagtacgaaaaaatggcaagttatacaacc cccgatatgctacgcatgtctctacttgaaatatgccttaaagccaaattgttggccgat ggttcatcaatcaagcagtttttagctgaagcaattcaaccaccttcaccacagaaagtt aacaacagcatcgaaattttgattaaaatcaatgcattggaaccaaatgaaaagatcaca cagctggggagtcacctagcacatatgccagttaattgtcaattgggaaaaatgattcta tactccatttttctacaatgtgtggatcccgtattaacgattgtcagtgcactgtccgta aagtcattgtatatgctacgaaagaagaagaaagatgattgtgaatcaaataatgaattc gaaaattcgaatgcgacaaacggttttagtgatcatcaaacgattctaaaaacgtgtgaa gcttggtgcaacgatttgtcgaaaaggagcatgcagacaattatgggattgcgcaagctt atcatgaatcatttaaaaatggcaaagtacatcgatgacgactcaaaattgaacgaaaat gcatcgaaatgggagattgttaagtcgtgtctggtagctggcatgtgccgtaagtaa

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