Contarinia nasturtii (swede midge): 116348997
Help
Entry
116348997 CDS
T08003
Name
(RefSeq) uncharacterized protein LOC116348997
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116348997
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116348997
5.6.2.5 RNA 5'-3' helicase
116348997
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116348997
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
FHA
Viral_helicase1
AAA_19
AAA_30
SLFN-g3_helicase
Yop-YscD_cpl
ResIII
AAA_7
Tubulin
UvrD-helicase
AAA_22
nSTAND3
nSTAND6
AAA_16
Motif
Other DBs
NCBI-GeneID:
116348997
NCBI-ProteinID:
XP_031636106
LinkDB
All DBs
Position
Unknown
AA seq
977 aa
AA seq
DB search
MQHIKREPVVERPKLSLIAVSEAARKFKNIFVLEPNRNYTVGREKTSDIYLGSPLCSKSH
CILQVGEEEVIVKDQSLYGTRVNFVNYKDSRCILTEGDLIGFGCATNTKHLKDKNDHKYY
VYRFTIGSGLNSSETIELLSDDDDDDAVRNRGISGFCVEDAVETDDEDCPSADEMDVKPD
IHSLMRTVHLGVEIKQEIDYNCYKYDTGSQSEPIIVNDIPYAVDDEDKFNEDILICEPPR
KRIRPTDVNEFTSLLASETETELESESKDEENDTINESGSEQIFAPEYQMSDTTRKEKCK
IVVRSRGQQLATDMLMSEKLLMKNINEASAPVQGTAGAKTPAGPSTSTFILDSTYLPEPE
FSKISIQDLNNQFISEITKWNYAWIRDKNPNPLQYQMQVKPLGVNFANLAAFQRQIKNFL
LMEIYSIVYTEFHRIHKRSQNTFTKLMDYQYDENLKRYIYTCFAETKDCRVAEILPGDYT
VVTTHKGHCMAFVTYARRESNGWQFEMQSAHVIEKDKKFKPKCLQVTFVANVQAMLEYFI
SLFELRKSSLLEVFLCPSSQHVDQSQTANDFSKGDKFTDILEKIYEKCAISLIGCRKILL
VNGGAGTGKTKFICSLLKKFKNENFQYTKSILVCGIKNVLVDQMAVEVFRDITSIARFGK
FSNMRSDVRTKIGVEKFSPKLKDVNIVFTTVSNAVDLLHVDRSFDVCIVDDASLCSEAEI
LPLFRLKLTTLLLVGDEKLQTSSTINECCRDNGYSRSLFTRVIASYKQLNSERILYPTLY
EQHRMLPELSLWPNKFFYQNQMKMGSIARCARSPFHPYTVFQVNQIEDIEIDFLKQLLEF
CLQYIEPKRCSYGIICGHPSSKDEIEAQIKENQRFSGIEVSGYDSFQGQQKDIIIMVALK
PTNGFELFSTKETLGIALTRAKESLIFCGNFQHVTTVVDSMTSIWTSLLSDAKTRKRFYD
LNGMFDESLVKNVLKNR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatataaagcgggagccagtggttgagaggccaaaattgtctctgattgctgta
agcgaagcagcaagaaaatttaaaaatatcttcgtgctagaaccaaatcgaaattatacg
gtgggtcgagagaaaaccagtgatatttatttgggctcgcccctatgtagcaaaagtcat
tgcatattacaagtgggcgaggaagaggtgattgttaaagatcagagtttgtatggtact
cgtgtgaattttgtgaattataaagacagtcgatgcattttaaccgagggtgatttgatt
ggattcggttgtgcaacaaataccaagcatctgaaggataaaaacgatcataaatattat
gtgtatcgttttacaattggaagcggcctaaactcatcggaaacgattgaattattgtcg
gacgacgatgatgatgatgctgtgagaaatagaggtatcagcggtttttgtgtggaagat
gctgttgaaacggacgatgaagattgcccgtcggcagatgaaatggatgttaaaccagac
attcacagtttaatgcgaacggtgcatcttggtgtcgaaataaaacaagaaatcgattat
aattgttataaatacgatacgggaagtcaaagtgaaccgattatcgtgaatgatataccg
tatgctgtcgatgatgaagataaattcaatgaagatattttgatatgtgaaccaccacgt
aaacgaattcgaccaacagatgtgaacgaattcaccagccttctggctagtgaaaccgaa
acagaactcgaatccgaatcaaaagatgaagaaaatgacacaataaatgaatctggttca
gaacaaatttttgcacccgaataccaaatgagcgatacaacacgcaaagaaaaatgtaaa
attgttgtacgatcacgtggtcaacagcttgcaactgatatgcttatgtccgaaaaatta
ttgatgaaaaatataaatgaagcaagtgcaccggtgcaagggacggctggtgcaaagaca
ccagctggtccatccacatcgacattcattctagattcaacctatttacccgaaccggaa
tttagcaaaatttcgattcaagatttgaacaatcaattcatttcggaaattacaaaatgg
aactatgcatggattcgagacaagaacccaaatccactgcaatatcaaatgcaagtgaaa
ccacttggcgtaaattttgcgaatttggccgcgtttcaaaggcaaataaaaaactttcta
ctcatggaaatatattcgatcgtgtacactgaatttcaccgaattcacaaacggagccaa
aatacatttacaaaattgatggattaccaatatgacgaaaatttgaagcgttacatttat
acatgctttgctgagactaaagactgtcgagtggctgagattctcccgggtgattatact
gttgtgacaacccacaaaggacattgtatggcattcgttacgtacgctcgccgggagtca
aatggatggcaattcgaaatgcaaagtgcccatgtcatagaaaaagataaaaaattcaaa
ccgaaatgtcttcaagtcacctttgtagcgaatgttcaagcaatgttggaatattttatc
agtttgtttgaactcagaaaatcatcactcctagaggtgtttttatgtccaagtagtcaa
catgtggatcaatctcaaactgccaatgacttcagtaaaggagacaaattcacggacatt
ttggaaaaaatctatgagaaatgtgcgatttcattgattggatgccgcaaaattttgtta
gtcaatggtggtgccggaacggggaaaacaaaattcatttgcagtctacttaaaaagttc
aaaaatgaaaattttcaatacacaaaatcgattttagtttgtggcataaagaatgttctc
gttgatcaaatggcagtggaagtttttcgggatataaccagcatcgcacgatttggaaaa
ttctcaaacatgaggagtgatgttcgcacaaaaattggcgtcgaaaaattcagcccgaaa
ttgaaagatgtgaatattgtatttacaactgtaagcaatgccgttgatttgttgcatgtc
gatagatcatttgacgtgtgcattgtggatgatgcttcactttgctcagaagccgaaatt
ttgccactatttcggctgaaattgaccacactgctattggtcggcgacgaaaaacttcag
acctcatcaacgatcaatgaatgctgtcgtgataatggatactctcgttcgctgttcact
cgtgtcattgccagttacaagcaattgaattcggaacgaattctctatccaacgctgtac
gaacaacatcgaatgctgcccgaactaagtttatggccaaacaagtttttctatcaaaac
cagatgaagatgggatcaatcgcacgttgtgcgcgatctccattccacccatacaccgtg
ttccaagtcaatcaaatcgaagatattgaaattgactttttaaaacaacttttagaattt
tgcttgcaatatatcgaaccgaagagatgctcttatggaatcatctgtgggcatccgagc
tcgaaagatgaaatcgaagctcagatcaaagaaaatcagcgattcagtggaattgaagtc
agtggatatgattcatttcaaggccaacaaaaagacataattattatggtggcattgaag
ccaaccaatggatttgaactgtttagtacaaaggaaacgttaggcattgctcttactaga
gctaaagaatcgcttatcttttgcggtaatttccaacatgtaaccaccgttgtcgattca
atgacgagcatatggacgtcattacttagtgatgccaaaacacgaaaacgcttctatgac
ctcaacggaatgtttgatgaatcgctggttaagaacgtattgaagaatcggtga
DBGET
integrated database retrieval system
