Contarinia nasturtii (swede midge): 116349098 Help Entry 116349098         CDS       T08003                                  Name (RefSeq) protein suppressor of forked   KO K14408   cleavage stimulation factor subunit 3 Organism cns  Contarinia nasturtii (swede midge) Pathway cns03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cns00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     116349098  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cns03019]     116349098 Messenger RNA biogenesis [BR:cns03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      116349098 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Suf HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C Elongin_A Motif Other DBs NCBI-GeneID:  116349098 NCBI-ProteinID:  XP_031636230 LinkDB All DBs Position Unknown AA seq 714 aa AA seqDB search MNIKDQIKIDIEWGHERLVRAQQTVELRPYDVEAWSVLLREAQNRPANDVRSLYESLVAV FPTTARFWKIFIEQEMKARNYERVEKLFQRCLIKILNIDLWKLYLTYVKETKSGLSTHKE KLAQAYDFALEKIGMDLHSFSIWSDYVQFLRGVDATGSFAENQKITAVRRVYQKAVLTPI IGIEILWKEYIQFEQNINPIISEKMSLERSRDYMNARRVAKELEAVTKGLNRNLPAIPPT LTKEEVRQVELWKKYIAFEKSNPLRSEDTALVTRRVMFATEQCLLVLNHHPAVWHQAAQY LDQSSKLLTEKGDVNAAKAFADEAANILDRAINGPLCRNALLYFAYADFEEGRMKYDKVH QMYNKFISIPDVDPTLTYVQYMKFARRAEGIKSARTVFKKAREDIRSRYHVFVAAALMEY YCSKDKDIAFRIFELGLKKFGGNPEYVKCYVDYLSHLNEDNNTRVLFERVLSSGGLTSQL SVDVWNRFLEFESNIGDLSSIVKVERRRSAVLETLKDFEGKETAQLVDRYKFLDLFPCTS VELKSIGYSPDTGLFTKQTEAENEEIVCQLPRPDFSQMIPYKPKSNPYPYEHPLGGGTFP QPPALALLCSQLPPPVCFRGPFVAIDSLIDVFNRIKLPENSPVPNASDNGCDVKLFDLAK SVHWIVEDSAYSGEGLKRKMLPVNDDSDDETTASRPPPAQDIYRLRQQKRFNKS NT seq 2145 nt NT seq  +upstreamnt  +downstreamnt atgaatattaaggatcaaattaaaattgatattgaatggggccatgaaagactggtgcgt gcacaacaaactgtagaattacgaccgtacgacgtcgaagcgtggtcagttttattacga gaagcacaaaataggccggcgaatgatgttcgttcactgtacgaatcgctagtggctgtt tttccgaccacagctcgtttttggaaaattttcatcgaacaagagatgaaagcccgaaac tatgagcgtgtggaaaagttgtttcagaggtgtctcatcaaaattttgaacattgatctt tggaaattgtatttaacatatgtaaaagagactaaatccggcttgagtacccacaaagaa aaattggcgcaagcttatgattttgcattggaaaagattggaatggatttgcattcattt tcaatttggagtgattatgtgcagtttttgcgaggcgttgatgcgaccggtagttttgcc gaaaaccaaaagatcacagccgtacggcgtgtatatcaaaaggccgttctaacgccgatc attggcattgaaattttgtggaaagaatacattcaattcgagcaaaacatcaatccaata atatccgaaaaaatgagcttagaacgttcacgtgactacatgaatgcacgtcgtgtggcc aaagaattggaagcagttacaaaaggattgaatcgaaatctaccggcgattccaccgaca ttgaccaaagaagaagtgcgacaggttgaactgtggaaaaagtacattgcatttgaaaaa tcgaatccattgcgaagcgaggacaccgcactggttacacgacgcgttatgtttgcaacg gaacaatgtttattggtgttaaaccatcatccggctgtttggcatcaggctgcacagtat ttagatcagagctcaaaattgcttaccgaaaaaggagatgtcaatgcggccaaagcattt gctgatgaagccgccaatattttagatcgtgcaattaacgggccattgtgtcgaaatgca ctgttgtactttgcctatgctgactttgaggaaggtcgtatgaagtacgataaagtacac caaatgtacaataagttcatatcgattccggatgttgacccaaccttgacctatgtacag tacatgaaatttgcgagacgtgctgagggcatcaaatcagctcgtacggtgtttaaaaag gctcgcgaagatattcgttcacgttatcatgtatttgttgctgccgcgctcatggaatat tattgcagcaaagataaagatattgcatttcgtatatttgaattgggtttgaagaagttt ggcggtaatcctgaatatgtcaaatgttacgttgactatctatcacatttgaatgaggat aacaatacccgtgtactgtttgaacgtgttctttcttctggtggtttgacatcgcagtta tctgtcgacgtttggaatcgctttttggagtttgaatcaaatatcggtgatttatcgagt attgtaaaagttgaacgtcgccgtagtgccgttttggaaacgctcaaagatttcgaagga aaagagacagcacagctcgttgatcgatataagtttttggacttgttcccatgtacatca gttgaacttaaatcgattggatattcacctgacaccggcctattcacaaagcagacagaa gctgaaaatgaagaaattgtatgtcaattgcctcggcccgatttttcgcaaatgataccg tacaaaccaaaatcaaatccatatccgtatgagcatccattgggtggtggaacctttcca caaccaccggctttggctttactttgttctcaattaccaccgccggtatgctttcgcggt ccgtttgtcgcaattgattcgcttattgatgtattcaatcgtatcaaattgccagaaaat tcacccgttccgaatgccagcgataatggatgtgatgtaaaactatttgatctggccaaa tcggtgcactggatcgtcgaagatagtgcgtattcgggcgaaggtttaaaacgaaaaatg ctgccagtcaatgatgatagtgacgacgaaacaaccgcatcaagaccaccaccagcacaa gacatttatcgattgagacaacagaaacgttttaataagtcctaa

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