Contarinia nasturtii (swede midge): 116349956
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Entry
116349956 CDS
T08003
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116349956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116349956
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116349956
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
116349956
NCBI-ProteinID:
XP_031637506
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
MSEENNEDDSWLYGSSNENQENQEEQPQIDEKIITEDQSALAFSNDTTQDQDDSRNEEYQ
DDANEYNSQENSFIAENAVDTEKVNGNSDVNGSVSQKNENDDDDSDDDEDDIVVTIGDIT
PSSTFNIKQRSGNLLVPTSTAGQDKPKTNLGKFSIEEFESVGTISGQSAVEYNLEAIEDK
PWRKPGADITDYFNYGFSEETWRAYCERQKRMRHESGAGLSGLGPNPTQTTPINNNPNRT
LTSLTTSDNSKYSVPGTTNSHSGPPNFTNRGFNATPALAKENVIQVMTAERREYSRPKGK
FDVSMSMPPPPFNMGNEQFYPDDTYSYGYEPTQEQQWNNDNVGVGWMPSGIKELTPGPQQ
MMPPPPMNMNMPPPNAMMPPNMMNVPQMVPPPQHNMSIGIGPMPPMMPPPVINNTTIPPN
RGNEDHRNNQPMDKRNDSAPPSAWRRDKERDYRDREREEESTSDRERRRERERYRSDRDR
GGSSRRDRSRSRERSSRRRSKSRSRERERKSRDKKKSHKKDKDDSE
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagagaataatgaggacgattcgtggttgtacggtagttcgaatgaaaatcaa
gagaaccaagaagaacaaccacaaattgatgaaaaaataataacagaagatcaatctgcg
ttggcattttcaaatgatacaacacaagatcaagatgatagtagaaatgaagaatatcag
gatgatgcaaacgaatataatagtcaggaaaatagctttatagctgaaaatgcagttgat
actgaaaaggtgaacggtaattcagatgtgaatggttcggtttcacaaaagaatgaaaac
gacgacgacgatagcgatgatgacgaagatgatattgtagttacaattggtgatattacg
ccttcttcaactttcaatataaaacaacgtagtgggaatttattggtaccaacatcgacc
gccggtcaagacaagccaaaaaccaatttgggtaaattcagtatcgaagaatttgaaagt
gtgggtaccataagtggccagtcagccgtggaatataatctcgaggctattgaggataaa
ccatggcgaaagcctggtgcagacatcacagattattttaattatggttttagtgaagaa
acttggcgagcatattgtgaacgacaaaaacgtatgcgacacgaaagcggcgctggtcta
tctggattgggaccaaatcctactcaaactacaccaatcaacaataatccaaatcgtacg
ttaacttcgctgacaacatctgataatagtaaatattcggtaccaggaacaacaaactca
catagcgggccaccaaactttacaaatcgaggattcaacgcaacgccagcactcgcaaag
gagaatgtaatccaagtaatgacagccgaaagacgtgaatacagtcgaccgaagggtaaa
tttgatgtatccatgtcaatgccacctccgccattcaatatgggcaatgaacaattttat
cccgatgacacttatagctatggttatgaaccgactcaagaacaacaatggaacaacgat
aatgttggcgttgggtggatgccatcaggaatcaaggaacttacacctggtccacaacaa
atgatgcccccaccgccaatgaacatgaacatgccaccaccaaatgctatgatgccgcca
aatatgatgaatgttccacaaatggtgccaccaccacaacataacatgagtataggaatt
ggtccaatgcctccaatgatgccaccgccagtaattaacaacactacaattccaccaaat
cgcggtaacgaagatcatcgcaataatcagccaatggataagcgaaacgattcagcccca
ccttcggcatggcgtagagataaagaacgtgattatcgcgatagagagcgagaagaagaa
tcaacatcagatcgagagagacgacgtgaaagagaacgatatcgttcggacagagatcgg
ggcggctcatcacgaagggatcgatcacggagtagagaacgttcttctcgtcgacgttcc
aaatcaagaagtcgcgagcgtgaacgaaaatcgcgtgacaaaaagaaatcacacaagaaa
gacaaagatgattcggagtaa
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