Contarinia nasturtii (swede midge): 116350570
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Entry
116350570 CDS
T08003
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116350570
03036 Chromosome and associated proteins [BR:
cns03036
]
116350570
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116350570
Chromosome and associated proteins [BR:
cns03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
116350570
SLIK complex
116350570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
Myb_DNA-binding
DUF3783
Motif
Other DBs
NCBI-GeneID:
116350570
NCBI-ProteinID:
XP_031638254
LinkDB
All DBs
Position
Unknown
AA seq
1913 aa
AA seq
DB search
MSQDLEESFESNRDGSNSDGSSSGSDSDSDGSTSSSSSGSSSSSNSSNPSRQSRQSNANA
NVPNPIANNSSGGSSLNQSKSSTKHSSSEESGTDGSQSSSDDSSDNENEQQNNSNASSAN
DTNESDNAENEGNQEADSKSSDDDDESYQVTKRNTRPRKAPQPPKRTAANNRRRKKWDET
SDEESASMEPSNSEDEQYSDHNRRPRRQVAVATKKQQAKRKAARKKNYSSDSDSDDDPKR
SATRRAAAAVSYKEASEDEKTDSEDLIDVDYDESSVLATQEESDKSETIERVIQRRKGKR
GDTGNKTTIYASEEQNGVASDSQADVKTVSSSKQNGEIEEQYLIKWKGWSYIHCTWESEE
TIREQKVKGIKKLENYIKKERDIEHWRKYANVEDIDYYECQLELQQDLLKSYNNVERIIA
ESQKPDGALDYLCKWESLPYSEATWEDSSLVLRHWPEKIQDFNRREESNQTPSRHSRVIK
YRPKFQQLKKQPEYMGEDRGLKLRDYQMDGLNWLILTWCKENSVILADEMGLGKTIQTIC
FLNYLFKSQSLHGPFLCVVPLSTMTAWQREFCIWAPEMNIITYLGDVQSREIIRQYEWCF
ASTNRLKFNAILTTYEILLKDKAFLGCVSWAALLVDEAHRLKNDDSLLYKALYEFETNHR
LLITGTPLQNSLKELWALLHFIMPTKFTSWQEFEEKHENAAEKGYTGLHKQLEPYILRRV
KKDVEKSLPAKVEQILRVEMTSIQKQYYKWILTKNFNALRKGSKGSSSTFLNIVIELKKC
CNHASLIRQNELEQAYHHGDALQMLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLD
ILAEYLQKRHFTFQRLDGSIKGEIRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADT
VIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVERAKQKMVLDHLVIQ
RMDTTGRTVLDKNSSSTSTPFNKEDLSAILKFGAEELFKDEAEGDGDDLICDIDEILRRA
ETRDEAPTMVGDELLSAFKVASFAAFDEDAEESVVSPSTKSAYNKLSKGNDAINEVTGET
SQDWDEIIPEHIRRKVEEEERNKEMEDLYLPPRNRKTLQQINQQADGGNEKRGKKRKKQK
SDDDSDNESAAGSDEDRPKKRGRPSLKEKFCNFTDAELRKFIKSYKKFPVPLKRLDAIAL
DAELQEKPLTDLKKIGEMLRDRCVKFLAEHKEQPQPDKKAAKAAAAEEDGEGGKKKGVRA
GFSIKFGGVSFNAKTLMACEEELAPLDQVIPSDATERSKWIFDIKTRPANFDVEWTTEDD
SRLLRGIYQYGIGSWESMKMDPSLNLSEKILANDSNKKPQGKHLQSRAEYLLKIIRKNLE
LTKGMNKGKGKKPRKPKEPKPAKSKDIIENENISSADDEKKKKEHHHHHHTPIVAAHENN
NSNDRTALNQSQPHNHQTAQNIPNSHDEVSNGSATKETAKNSTKKTKANKEQKKNKTKVD
GPMHFTANNEPRALDVLGGLDPSVFNECKEKMRPVKKALKALDNPDQSLSNADQVSHTRE
CLVRIGKQIELCLAEYKEQDKIKEWRSNLWHFVSKFTEFDAKKLFKLYRHAVKRAEDESD
AKSTTTTSPAKNSKDLAKDSKSGHDHKDKSNQSLDEKQQRKEKKRMQREKERREKEEHNR
HRQDDTNNTMDNGLHKDDSGKRRLEEGELVEDTPTKSYKRQHPDNRSGRSGKEERSRWDS
NDHEHGRVRHNSGSHSQPINPSHLPNAQRVPQNYDGRDRSMYNSGDAERWRDNRYNDHKR
FDAYNRGTPHGYHSRDNRDHRDRDRDRDRRGIDNKRRYQQPPMGYPSNHYISHNAPYYPP
DAASIPANSSNAAPYRYPPGNSSSSEWRSREQEFDNYRREYDRRAPPPPSGTS
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggatcttgaagaaagtttcgagtccaatagagatggcagcaacagtgacggt
tcttcatccggtagcgatagtgattctgatggttcgacatcatcgtcaagcagtggctca
tcaagctcgtcaaattcaagcaatccatcacgacaaagtcgtcagtcaaacgcaaatgca
aatgtaccgaacccgatagccaataattcaagtggtggatcatcactaaatcagtcaaag
agttcaacaaaacattcatcgtcggaagagtcgggcacagatggttcgcaatcaagttca
gatgatagttccgacaatgaaaatgaacaacaaaataattcaaatgcgagtagtgcaaat
gacacaaacgagtcagataatgcagagaatgaagggaatcaagaggcggattcgaaaagc
agtgacgatgatgatgaaagttatcaggttacaaagcgaaatacaaggcctagaaaagca
ccacagccaccaaaacgaacagcagcaaataatcgacgaaggaaaaaatgggatgaaaca
tccgatgaagaaagtgcttcaatggagcctagcaatagcgaggacgaacaatatagtgat
cacaatcgtagaccgcgtagacaagtagctgttgcaacaaagaaacaacaagccaaacga
aaagcagccagaaagaaaaattattcgtctgacagtgactctgatgacgatccgaagagg
tctgcgactcgtcgtgcggcagctgcagttagttacaaagaggctagtgaagatgaaaag
accgattcggaagacctgattgatgtggactatgatgaatcatcagtattagcgacgcaa
gaggaatcggataaaagcgagacgatcgaacgagtgattcaacgacgaaagggaaaacgt
ggagatacaggaaataagacaacaatctatgcatcggaggaacagaatggtgtcgcatca
gattcacaagccgatgtcaaaacagtgtcatcatcaaaacaaaatggtgagatcgaggaa
cagtatttaatcaaatggaagggctggtcatacattcattgcacatgggaatctgaggaa
acgatacgcgaacaaaaagtcaaaggtattaaaaaacttgaaaattatataaaaaaagag
cgtgacattgaacattggcgaaagtatgccaatgtggaggacattgattactacgaatgc
cagttggaactgcaacaggacttgctgaaatcgtacaacaatgtcgaacgaattatagcc
gaatcacaaaagccggatggtgcattagactatttgtgcaaatgggaaagtttaccatat
tccgaagcaacatgggaggattcaagtcttgtgctgcgccattggccggaaaaaattcaa
gattttaatcgacgtgaagaatcaaatcaaacaccatctcgacatagtcgtgtcattaaa
tatcgtccaaagtttcaacagctaaaaaagcaaccggaatatatgggcgaggacagagga
ctcaagctacgtgattatcaaatggacggtttgaattggttaatattaacatggtgcaaa
gagaattctgtgattttagccgatgaaatgggtctaggaaagacaattcaaaccatatgc
tttttaaactatctatttaaatcacaatcattgcacggaccatttttatgtgttgtgccg
ttgagtacgatgaccgcatggcaacgtgagttttgtatttgggcaccagaaatgaatata
atcacatatttgggcgatgttcaatctcgtgaaattattcggcaatatgaatggtgcttt
gccagtacaaatcgactgaaattcaatgcaattctcacaacttatgaaattttgctaaag
gacaaagcatttttgggttgtgttagctgggccgcattactcgttgatgaagcgcatcgt
ttgaaaaacgatgattcgctcttgtataaagcattgtatgaatttgaaacgaaccatcgc
cttttgatcaccggcacaccgctgcaaaattcactgaaagagttatgggctctgttgcat
ttcattatgccgaccaaattcactagttggcaggaatttgaagaaaagcatgaaaatgcc
gccgaaaagggttatacagggctacacaaacaattggagccatacatattgcggcgtgtt
aaaaaagacgtagagaagagtcttccggctaaagtggaacaaatattacgtgtagagatg
acttcaatacaaaaacaatactataaatggattctaacgaagaactttaatgcattgcga
aaaggatcaaagggttcgtcgagcacattcttaaatattgtcatagaattaaaaaaatgc
tgcaatcatgcgtcgctaattcgacagaatgaactggagcaggcgtaccatcacggcgat
gctcttcaaatgcttctaaaaggttccggcaaacttgtactgctcgataaacttctgtgc
cgtctcaaagaaactggacatcgtgtactcattttcagtcaaatggttcgtatgttggac
attttggcagagtatttacaaaaaaggcatttcacatttcaacggctggatggaagcatc
aaaggagaaattcgaaaacaagcattggatcacttcaatgctgaaggttctcaggacttt
tgctttttattgtcgacacgtgccggtggcttgggtattaatttagccacagccgacacc
gttattatatttgattccgattggaatccacaaaatgacctacaagctcaggcacgagca
catcgtatcggccaaaagaatcaagtgaacatttatcgattagttactgcccgaagtgtt
gaagaggatattgttgagcgtgccaagcaaaaaatggttcttgaccatttggttattcaa
cggatggacacaactggtagaacagttttggacaaaaatagctcgtcgacatcgacacca
ttcaataaagaagatttatcggcaattttaaaattcggcgctgaggaattgttcaaggat
gaagctgaaggcgatggagacgatttgatatgtgatattgatgagattctacgacgggca
gagacacgtgatgaagcaccaaccatggttggcgatgaactcctttctgcatttaaggtt
gcttcatttgctgcatttgatgaagacgccgaagaatcggttgtcagtccatcgaccaaa
tctgcatacaataaattgagcaaaggaaacgatgcaattaacgaagttacaggagagacg
tcacaagactgggatgaaattatacccgagcatattcgacgaaaagttgaagaggaagag
cgtaacaaggaaatggaagatttatatttgccacctcgaaatcgaaaaaccctacaacaa
atcaatcagcaagcagacggcggcaacgaaaaacgtggcaaaaaacgaaagaagcaaaaa
agtgacgatgatagtgacaatgaaagtgcagccggcagtgatgaagatcgaccgaagaaa
cgcggacgaccatcactaaaagagaaattctgtaatttcactgacgctgaactacggaaa
tttatcaaaagttataaaaagtttccggtgccattgaaaaggctggatgcaattgcatta
gatgctgaactacaggaaaagccattaaccgatttgaaaaagatcggagaaatgttacgt
gatcgttgtgtaaaattcttagctgaacacaaagaacaaccgcaacccgataaaaaggca
gccaaagcagctgctgccgaagaggatggtgagggtggaaagaagaaaggtgttcgtgct
ggattctcaataaaatttggtggcgtttcgttcaatgcaaaaacactgatggcgtgcgaa
gaagaactggcacctttggaccaagtaatacccagcgatgcaacagaacgttcaaaatgg
attttcgatattaaaacgcgaccggccaattttgatgtagaatggaccaccgaagatgat
tcaagactattgcggggcatttatcaatatggtattgggtcatgggaatcaatgaaaatg
gatccatcgttgaatctttctgagaaaattttagccaatgacagcaataagaagccacaa
ggaaaacacttacaatcacgtgccgaatacttactcaaaatcatccgaaagaatttggaa
ttaacaaagggaatgaataagggcaaaggtaaaaagccacgcaaaccaaaagaaccgaaa
ccggccaaatccaaagatattattgaaaacgaaaacatttcatcggctgacgatgagaaa
aagaaaaaagaacatcatcatcatcatcatacaccgattgtcgctgcacatgaaaataac
aattcgaatgatcgcacggcattaaatcaaagccagccacataatcatcaaactgctcaa
aatatacccaatagccacgatgaagttagcaatgggtctgccacgaaagaaactgccaaa
aattcaacaaagaaaacaaaagctaataaagaacaaaagaaaaataaaacaaaagttgac
ggtccgatgcatttcactgcaaacaatgagccacgtgctctggatgtgctcggcggtttg
gatccatctgtttttaatgaatgtaaagagaaaatgcgacccgttaagaaagcgttaaag
gctctcgacaaccctgatcaaagtctcagcaatgccgatcaagtgagccatacgagggaa
tgtctagttcgaattggcaaacaaattgaattatgcctggcagagtacaaagaacaagat
aaaatcaaagaatggcgaagcaatttgtggcactttgtctcaaaattcaccgaatttgat
gcaaagaaactgtttaaattatacagacatgcagtgaaacgtgccgaagatgaaagtgat
gcaaaatcaacgacaacaacatcgcccgccaaaaattcaaaagatttggcaaaagactca
aaaagcggccatgaccacaaagataaatcaaatcaaagtttggacgagaaacaacagcgc
aaagagaagaagcgaatgcaacgggaaaaagagcgaagggaaaaggaagaacacaatcgc
catcggcaagatgatacgaacaacactatggataatggtttgcataaagatgattcaggc
aaacgaaggcttgaagaaggcgaactggttgaagacaccccaacaaaatcatataaaagg
caacatccagacaacagaagtggtcgttcaggcaaagaagaacgcagcaggtgggattca
aatgatcacgagcatggtcgtgttcggcacaattctggatcgcattctcaaccaataaat
ccatcacatttgccgaacgcacaacgcgtgccgcagaattacgacgggcgagatcgttca
atgtataattcgggtgatgcagagcgatggcgtgacaatagatataacgatcataaacgc
tttgatgcctacaatcgcggaactccacatggttaccatagcagagataacagagatcac
cgtgacagagatcgtgacagagaccgaaggggcattgacaataaaaggagatatcagcag
ccaccaatgggatacccaagtaatcattacatatctcacaatgcaccttactaccctcca
gatgccgcatcgataccagcgaacagcagtaatgccgcaccctatagatatccgcccggc
aacagcagtagctccgaatggagaagtcgcgaacaagaatttgataattatcgacgtgaa
tatgatcgacgagctccgccaccaccatcgggtacttcataa
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integrated database retrieval system
