Contarinia nasturtii (swede midge): 116350712
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Entry
116350712 CDS
T08003
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116350712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cns03400
]
116350712
DNA repair and recombination proteins [BR:
cns03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116350712
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_II
MutS_IV
DUF3404
Motif
Other DBs
NCBI-GeneID:
116350712
NCBI-ProteinID:
XP_031638475
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MSANKSNLNTSGNTLFNYFSRSPSTPKSNKPAGTPVASPLTSKPNTPKTSKTPKTAKKAK
ETLKSPAKKLKLQPETNSDDDDEEETIKFKNKRKISRIIDSDSDYECENDENESDNSQSM
DIDDSKPKSRRNKKETNGSAVPKKKIKLDSNNAAASIKDKLKSNIDKSQSLSDVKENDDT
DVLDVPVVWRHNTLDFLKPEMIRDAEKRRPDDPNYDPTKLYVSNKYLDSVTPGMRQWWVL
KSQNFDTILFFKVGKFYELYHMDADIGVKELGFTYMKGDFAHSGFPEQAFYRMSTTLVER
GYKIARVEQTETPDVMNERVKTMKKATKFDKIVNREICQVVTKGTQVFGQQVEISNEHQP
NYMLAIVEKTSSNGHRFGVAFIDTSIGEFNIGEFDDDKQCSRLLTLISHNSPVLVLHERG
RTSLELQQIFKSMLSNSMREALLSGSQVWEADKTLKVLNEKYYGPNNDKEWPDVIKMTQD
PDDHLGITPNANFKLALKALGTCLWYLTKCVIDQQIMAMCHFNYYIPPDIKIDDLDQLAA
DIAKKNFNKHMVLDSITLSNLKIIGDDRSLYNTLDNCCTKFGKRLLNYWICSPSCEKSVI
RERQEAIKEMMENRDQLSNARTILGTLPDLERQLAQIHTFGNKNRAVNHPDSRASMYEQT
KYNKKKIQDLTSTIQGFEALVKIPKIFSGFSSKLIKRLTQIEPIGEIPSDYNAKVQFFKN
SFDFDAAKATGVIAPGPGIDSEYDSIGVKIKEIEQDLANYLKQQEKFFGCRLQYYGKDKN
RFEIEVPEKEAKKADSRYKLESQRGKGNKAVRCFSTDETRHMLKEMVQAEEQRNNVLKDL
MRRMFEKFSDEYNVWKKIIDCVAILDLIMSFTVYAQNQAQICFPEIIDNSADGPVIEIEE
GVHPCISLKLNDDFIPNGITLGGKTTPPLAILTGPNMGGKSTLMRQVGLLVIMTQIGCAI
PAESAKISLIDRIFTRLGAQDDILAGQSTFLVELSETSAILKHATVNSLVLLDELGRGTA
TYDGTAIAAAVVDFLANLKCRTLFSTHYHNLVDNFHNDQRITLGHMACMVESEGNDDPTK
ETVTFLYKYTDGACPKSYGFNAAKLAGMPLSIIKRAYEYSKKVELIALKRKLFSKVLSSG
GVHDIKELLQKIKKCTI
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaaataaaagtaatttgaatacaagcggtaatacgctgttcaattatttctca
cgaagtccatcgacaccgaaatcaaataaaccagcaggcacgccagttgctagcccattg
acatcgaaaccgaacacaccgaaaacatcgaaaacacccaaaactgcaaaaaaggcaaaa
gagacattaaaaagtcccgctaagaagttgaaattgcaaccggaaactaattcggatgat
gacgacgaagaggaaaccatcaaattcaagaataaacggaaaatttcacgcataatcgat
tcagattcggactacgaatgtgaaaacgatgaaaatgaatcggacaacagtcaatcgatg
gatattgacgattcgaaaccaaaatcacgcagaaacaagaaggaaactaacggaagtgcg
gttccaaagaaaaaaatcaaattggattcgaacaatgcagcggcttcaattaaagataaa
ttgaagtcgaacattgataaatcgcagtctttgtctgacgtgaaggaaaatgacgacact
gacgttcttgatgtgcccgtcgtttggcgccataatacactcgactttttgaaaccggaa
atgattcgtgatgctgagaaaagacgaccagatgatccaaactatgatcccacgaaattg
tatgtgtcaaacaaatatttggacagtgtgactccaggaatgcgacaatggtgggttctg
aagtcacaaaactttgacacgattttattctttaaagttgggaaattctatgaattatac
cacatggacgccgatattggtgtgaaagaattaggctttacgtacatgaaaggtgacttc
gcacattcgggcttcccagaacaagcattctatcgtatgtcaacgactttggtggaacga
ggctacaaaatcgctcgcgttgaacagacagaaactccagacgtaatgaatgaacgtgtc
aagacaatgaagaaggcaactaaattcgacaaaattgttaaccgtgaaatttgtcaggtc
gtcaccaaaggtactcaagtttttggacaacaagtcgagatttcgaacgaacatcagcca
aattatatgctggcaattgtggaaaagacttcatcgaatggccatcggttcggcgttgct
ttcattgatacgtcaatcggtgaattcaatattggtgaatttgatgatgacaaacaatgt
tcccgtttgcttacattgatctcgcacaattcgcccgttttggttctccatgaacgtggt
cgtacatcattggaattgcaacaaattttcaagtcgatgttgtccaattcaatgcgtgaa
gcactgttgtcaggctcacaagtttgggaagccgataaaacattgaaagtactcaatgaa
aagtactatggccccaacaatgacaaagaatggccagacgtgattaaaatgacacaagac
ccagatgatcatttgggcattacaccaaatgcaaactttaaacttgctttgaaagcactg
ggcacctgtttgtggtacctcacaaaatgtgtaatagaccagcaaatcatggcgatgtgt
cacttcaattattacattccgccagacattaaaatcgatgatttggatcaattggccgct
gacattgcaaagaagaatttcaacaagcacatggttttggactcaatcactctttccaac
ttgaaaatcatcggagacgatagatcgttgtacaacacattggataattgttgtacaaaa
ttcggcaagcgcctattaaactattggatctgttcgccaagttgcgaaaaatcagtcatt
cgtgaacgtcaagaggccattaaagagatgatggagaatcgagatcaactaagcaatgct
cgcaccattcttggtacattaccggatttggaacgtcaactagctcaaatacacacattt
ggtaacaagaatcgcgctgtcaaccatccagactccagagccagtatgtatgaacagaca
aagtacaacaagaaaaagattcaggatttgacatcaacaatccaaggatttgaggcattg
gtgaaaattccgaaaattttctctggcttttcatcgaaacttatcaaacgattgacacaa
atcgaaccgattggtgaaattccctccgattataatgcgaaagttcagttcttcaaaaac
agctttgattttgatgcagcaaaggccactggcgtcattgcaccagggccaggtattgac
agcgaatacgattcgattggcgtaaagattaaagaaattgaacaagatttggccaattat
ttgaagcaacaagaaaagtttttcggttgccgtttgcagtattatggcaaggacaagaat
cgatttgaaattgaagtgccggaaaaagaggctaaaaaagccgattcaagatacaaattg
gaaagtcagcggggaaaaggaaataaagctgtacgttgcttcagcacagacgaaacacgt
cacatgctgaaagaaatggtgcaagccgaagaacaaagaaacaatgtgctaaaagatttg
atgcgtcgaatgtttgaaaaattctcagacgaatataatgtgtggaagaaaatcatcgac
tgtgttgccattttggatttaataatgtcattcacggtatatgcacaaaatcaagcacaa
atctgcttccctgaaatcatcgacaacagtgcagatgggccggttattgaaattgaagaa
ggcgtacatccatgcatctcactcaaactcaacgacgatttcattccgaacggaattact
ttgggcggtaaaactacaccaccgttggccattttaactggtccgaatatgggtggtaaa
agtactttgatgcgacaagttggtctgttggtcataatgacacaaattggatgcgcaata
ccagctgaatcggcaaaaatttcgttgatcgatcgcatttttacgcgactgggagcgcaa
gatgatattttggctggacaaagtacatttttggtggaactaagcgaaacatcggctatt
ctgaaacatgcaacagtgaatagtttggttttgctcgatgaactcggtcgtggtactgcg
acatatgatggaacagcaattgcagctgccgtcgttgatttccttgcgaatttgaaatgt
cgcacactcttttccactcattaccataatctggtggacaatttccataatgatcaacgc
atcacactgggtcacatggcatgtatggtggaatcagaaggaaacgacgatccaaccaaa
gagacggtcacatttttatacaagtacacagacggagcgtgtccaaaatcttacggtttc
aatgctgcaaaattggctggaatgccattaagcatcatcaaacgagcatacgaatactcg
aaaaaggtcgaattgatcgctttgaagcggaagcttttctcaaaagttctaagcagcggt
ggcgtacatgacatcaaggaactgctccagaaaatcaaaaaatgtacaatttaa
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integrated database retrieval system
