Contarinia nasturtii (swede midge): 116351045
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Entry
116351045 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase WM6-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03013
Nucleocytoplasmic transport
cns03015
mRNA surveillance pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116351045
09122 Translation
03013 Nucleocytoplasmic transport
116351045
03015 mRNA surveillance pathway
116351045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116351045
03041 Spliceosome [BR:
cns03041
]
116351045
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116351045
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116351045
Spliceosome [BR:
cns03041
]
Complex C
Other components
EJC/TREX
116351045
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116351045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Utp25_C
Helicase_C
DUF2249
Pox_polyA_pol_N
Motif
Other DBs
NCBI-GeneID:
116351045
NCBI-ProteinID:
XP_031638939
LinkDB
All DBs
Position
Unknown
AA seq
393 aa
AA seq
DB search
MPNQEMNEFERAKVHDFGNMKFKPEIQNFIDKSHLKKPSNADVKCIRRFVDGFNIVCGAK
LNMDKSDVLVLATSQLLEPTKNIEILVICSSLDFADVIKKRYKELNVESKVYICSEKEDI
IIETLKAETPHTVIGTLDCISKLIELKEIEWEHLKYLIWDEFDKISEPVGIRYALVKDIL
QKTPQIKRVMMFASSVFSEGERIIHKAILKNPIFVDNETKLILHGLRHYYIKTQERERVE
KILELLEAMNPDKAVIFVNSHAAEYKEIFSYLPKYEQFDQRILITTHLNAHNTENIQGVK
MIINYDLPNDADAYIDRVNCVAMNRSTIITFVSNEDAEMLEKIQKRFDIKMTEVSEVTAV
VSWVYRFERLHCPPLSRDMVQVLYQKIKSITKK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaccaagaaatgaatgaatttgagagagcaaaagtgcatgattttgggaacatg
aagttcaagccagaaattcagaattttattgataaaagtcatttgaaaaaaccatcaaac
gccgatgtgaagtgtattcgtcgatttgtggatggatttaacatcgtttgcggggccaaa
ctaaatatggacaaaagtgatgtgctcgtgctagcaacctcgcagctattggaaccaacg
aaaaatattgaaatattagtcatttgttcctctctagattttgctgatgttatcaaaaaa
agatacaaggaattaaatgtagaatcgaaagtttacatctgctctgaaaaagaagatatc
ataatcgagacactgaaagcagagacaccacacaccgttatcggcactcttgattgtatt
tcaaagcttattgaattgaaggaaatcgagtgggagcatttgaaatacttaatttgggat
gaatttgacaaaatttcggaaccagtgggaattcgttacgcattagtcaaagatatatta
caaaaaactccgcaaattaaacgagtcatgatgtttgcttcgagtgtatttagtgaagga
gaacgaattatacacaaggcgattttgaaaaatccaatattcgtcgataatgagaccaaa
ttgattttgcatggtttgcgtcattattacatcaaaactcaagagcgtgagagggtcgag
aagatattagaattgctggaagcaatgaaccccgataaagcagttatttttgtgaattcg
catgcagctgaatataaagaaatcttttcatacctaccgaaatatgaacagtttgatcag
cgcattttgatcacaactcatttgaacgcacataatacggagaatattcaaggagtcaag
atgattatcaactacgatttgccaaacgatgccgatgcatacattgatcgtgtgaactgt
gttgcaatgaaccgctcaacaatcattacattcgtttcaaatgaggatgctgaaatgttg
gaaaaaattcaaaagcgtttcgatatcaaaatgacggaagtttctgaagtaactgcagtc
gtatcctgggtttatcgattcgaaaggcttcattgcccaccactttctcgggatatggtt
caagttttataccagaaaataaagagtattacaaaaaaatga
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