Contarinia nasturtii (swede midge): 116351514
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Entry
116351514 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase dbp2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116351514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116351514
03009 Ribosome biogenesis [BR:
cns03009
]
116351514
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116351514
Spliceosome [BR:
cns03041
]
Complex A
U1 snRNP components
U1 related factors
116351514
Complex B
116351514
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116351514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116351514
NCBI-ProteinID:
XP_031639492
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MFNRDRGNSNSDFGRNNNNNNMGRGSGPSRGPMGGGGGSYRRDDNRSSDRRNGPNSGGDR
YSNNKNQQQPGDRLRRVRWEDFELIPFQKNFYSPCESVLHRTPQEIERFHRKHEITTKGR
DVPPPLLEFYEGAFPDYAMREIQKCGFEKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLA
YIMPAVVHINNQPRLSRGDGPIVLVLAPTRELAQQIQQVANDFGSCTHLKNTCIFGGAPK
GPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE
QIRPDRQVLMWSATWPKEVRMLAEEFLNSYIQVNIGSLNLSANHNILQIVDVCEEYEKEQ
KLMTLLQEISGEPETKTIIFVETKRRVDEITRAVCRNGWRAVAIHGNKTQQERDYVLSSF
RNGRQSILVATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTGRSNNTGTAYTLFTY
QNASKANDLIQVLKEANQVVNPKLFELSKSNSHGNNRNSRYGGRGNNGGNNFNRGNNDRR
QFGNNGNNNRSNGFNGNDNGFKRDRDRNENGGGGSRFSNNDGPARFSSNSMNGTSRFSNV
NSNGSSNNANTGSRYGKNNDGGMRYGGASNGIREGGSRFSAPNTQQTSRFSNNDSYNKTS
SNNDFYQNSTSKFKQYDNKSNTYDNKPKIPMTNSTNSTGGIAYPPYNNYGSDAMFAYPPP
PIH
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcgtgatcgtggaaactcaaactctgactttggtcggaataataacaacaat
aatatgggcagagggtctggcccatcccgtggacctatgggtggtggcggtggttcctat
cgacgagatgataacagatcatcggatcgacgaaacgggccgaattcaggcggtgatcga
tattcaaataataaaaatcaacaacaacctggcgatcgtttaagacgtgttcgatgggaa
gattttgaactaattccattccaaaagaacttctacagtccatgcgaatcagtgctgcat
cgtacaccgcaagaaattgaacgtttccatcgaaaacatgaaatcaccactaaaggtcgt
gatgtcccaccaccattgttggaattttatgagggtgcattccccgattatgccatgcgc
gaaattcaaaagtgtggcttcgaaaaaccaactgcaattcaagctcaaggttggccaatt
gcattaagtggtcgcgatatggttggtattgcacaaactggttcgggaaaaacgcttgca
tatattatgccagctgtggttcatatcaataatcagccacgtttgtcacgcggagatggt
ccaattgtacttgttttggctccaactcgtgagcttgcacagcaaattcaacaagttgcc
aatgactttggttcgtgcactcaccttaaaaacacttgtatatttggcggtgcaccgaaa
ggaccacaagcccgagacttggagcgtggtgtagaaatttgtatcgcaacaccgggtcga
ttgatcgattttcttgagaaaggaaccacaaatttgcgcagatgcacatatcttgttctt
gatgaagccgatcgtatgcttgatatgggcttcgagccacaaattcgaaagattatcgaa
cagattcgtcccgatcgtcaggtgttaatgtggagcgccacttggccaaaagaagtacga
atgttggccgaagaatttctcaattcctacattcaagtaaacattggttcattgaatctg
tctgctaatcataatattttgcaaatcgttgacgtttgcgaagaatatgaaaaggaacaa
aaattgatgactctgctgcaagaaatttcgggcgaaccagagacaaagactattattttc
gttgaaacaaaacgtcgcgttgatgaaataactcgtgccgtatgtcgaaatggttggcga
gcagttgcaattcatgggaataaaacacaacaagaacgtgactatgttttgagttcattc
cgaaatggacgtcaatcgattttagtagcaactgatgttgctgctcgtggcttagatgtg
gaagatgttaagttcgttatcaacttcgactacccaaacaacagcgaagattacgttcac
agaatcggtcgcacaggcagatcaaataacaccggtactgcttacacattgttcacctat
caaaatgcctcgaaagccaatgatttgatccaggtgttgaaggaagcaaatcaggtggtg
aatccaaaactgtttgaattatcgaaatcgaattcacatggtaacaatcgtaattcacgt
tatggcggtcgcggaaataatggcggaaataatttcaaccgaggtaataacgatcgtcgc
caatttggaaacaatggaaataacaatcggtccaatggttttaatggaaatgataatgga
tttaagcgcgacagagaccgcaatgaaaatggtggcggtggatcacgtttctcaaacaat
gatggacctgcacgtttttcatcgaacagcatgaatggcacatcacgtttttcaaacgtt
aactcaaacggatcgtcgaacaatgcaaacaccggttcacgttatggcaagaataacgac
ggtggtatgcgttacggaggtgcaagtaatggcattcgtgagggtggttcacgtttctca
gcgccaaatacacaacaaacatctcgtttctcaaataatgattcatacaataaaacatca
tcaaataatgatttctatcaaaattcaacatccaaatttaaacaatacgataacaaatca
aatacatatgataataaaccaaaaattcccatgaccaattccacaaatagtaccggtggt
atagcctatccaccttacaataactacggatcggacgcaatgtttgcgtatccaccaccg
ccgattcattaa
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