Contarinia nasturtii (swede midge): 116351515
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Entry
116351515 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase dbp2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116351515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116351515
03009 Ribosome biogenesis [BR:
cns03009
]
116351515
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116351515
Spliceosome [BR:
cns03041
]
Complex A
U1 snRNP components
U1 related factors
116351515
Complex B
116351515
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116351515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
116351515
NCBI-ProteinID:
XP_031639493
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MYNQMQSTNGKFNDRFRSPSNGIRNEPYRKPSSPVSKPQQASQNGSNLRAIDWTNISLTP
FRKNFYTPLTNVAQNDIDTFFKSNEITLRGSELPSPNMEFHDDMFPDYVMTSVRRQGFEK
PTAIQATSWPIALSGRDLVGIAKTGSGKTLAYVLPSMIHINNQERRKRGDGPIALILAPT
RELAQQIQQVCHDFGANARVSNTCIFGGAPKGSQARDLERGVDVVIATPGRLIDFLEKGT
TNLRRCTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVRMLAEEFLQS
YIQVNIGSVNLSANHNILQIIDVCGDEEKQDKLMRLLGEINDPDSKIIIFVETKRKVDDL
TRSINRGGWKACAIHGDKSQQERDYVLNAFRRGRQAILVATDVAARGLDVEDVKFVINFD
YPNNSEEYIHRIGRTGRSNNTGTAYTLFTIQNASKAGDLVNVLKEANQVVNPRLLDLVKK
GGNGSNRGKFNQRGRPNGGGMNDFRNRSQQMSNGQRPNNGGYGNGANQRPMSRFSSAQNG
NASYQPRTYNGNTGSTNQAYTPRSTASNYSSSATKNGYGNYDASSAVNGSSANQSRTTAD
QSKYNGFQSKSSSVIPNAYGQQHQSYMSSGIPSLYNLPPPSLPYNTVQSVPFNYPPPVLP
VKN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtacaatcaaatgcaaagtacaaatggaaaattcaatgatcgttttcggtcaccatcg
aatggtattcgaaatgaaccgtaccgaaaaccatcatcgcctgtatcaaaaccacagcag
gcatctcaaaatggcagcaatttgcgagccatcgattggaccaacatttcgttgacaccg
ttccgtaaaaatttttacacgccgttgacgaatgttgcacaaaatgacattgacacgttt
tttaaaagcaacgaaattacgttgcgcggaagtgaactgccatcaccaaatatggaattt
catgatgacatgtttcctgactatgtcatgaccagtgtacgacgacaaggcttcgaaaaa
ccaacggcaatccaagcaaccagttggccaatcgcattgagcggccgtgacttggttggc
attgctaaaactggttcgggaaaaacattggcatatgttttgccaagcatgatccatatt
aacaatcaagaacgtagaaaacgtggtgacggtccaattgcattgattttggcaccaaca
cgtgagcttgctcaacaaattcagcaagtatgccacgattttggagcgaacgcacgcgtg
agtaacacttgtatttttggcggtgcaccaaaaggtagccaagccagagatttggaacgt
ggtgttgatgtggtcatcgcaacaccgggacgattgattgattttcttgaaaagggaact
accaatttacgtcgatgcacttatctcgttcttgatgaagctgatcgcatgcttgacatg
ggcttcgagcctcagattcgtaaaatcattggtcaaatccgtccagatcgtcaagtattg
atgtggagcgcaacatggccaaaagaagtacgaatgttggccgaagaatttctccagtcc
tacattcaggtgaacattggttcggtgaatttgtcggccaaccacaacatattgcaaatc
atcgatgtatgcggcgatgaagaaaaacaggataaactgatgcgattgttgggtgaaata
aatgatcccgattccaagatcattatatttgttgagacaaaacgtaaagtcgatgatttg
acacggtcaataaaccgaggcggatggaaagcatgtgctattcatggcgataaatcacaa
caagagcgtgactacgtattaaacgcttttcgtcgtggacgtcaagcaattctggtggca
actgatgttgctgctcggggattagatgttgaagacgttaagttcgttatcaatttcgac
tatccgaacaacagcgaagagtatattcatagaatcggtcgtaccggccgatcgaataac
actggaacggcatatacattatttaccattcaaaatgcatcaaaagccggtgacctggtt
aatgtgctgaaggaagcaaatcaggttgtaaatcctcgacttttggatttggtaaagaaa
ggtggtaatggatcaaaccgtggcaaatttaatcaacgcggtcgcccaaatggtggcggt
atgaatgatttccgtaatcgttcacagcaaatgtccaacggtcaacgtccaaataatggt
ggctatggaaatggcgctaatcaacgtccaatgtcacgcttctcaagtgcacaaaatggc
aatgcatcatatcagccacggacatacaatggcaatactggaagtacaaatcaagcgtat
acaccacgatccacagcctcaaactattcatcgtcagctacaaagaatggctatggaaac
tatgatgcatcgtcggctgtaaatggttcgtcagcaaatcaatcccgaaccactgccgat
caatccaagtataatggtttccaatcgaaatcatcttcagttattccaaatgcttacggc
caacagcatcaatcttatatgtcatctggcattccttctctctacaatttaccgccacca
tctctaccatataatacagttcaatcagttccattcaactatccaccaccagttttacca
gttaaaaactaa
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