Contarinia nasturtii (swede midge): 116352010
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Entry
116352010 CDS
T08003
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog isoform X1
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116352010
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
116352010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_14
TPR_8
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_16
TPR_11
TPR_6
ARM_TT21_5th
TPR_7
TPR_9
TPR_10
TPR_Slam
TPR_MalT
ANAPC3
ARM_TT21_4th
PknG_TPR
ARM_TT21_C
TPR-S
TPR_BSK1_C
Motif
Other DBs
NCBI-GeneID:
116352010
NCBI-ProteinID:
XP_031640044
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MNSGTIEIPLRDTDEVIELDPEQLPDGEEVLSILRQEGSQINTWVNVALAYYKQNKTQDF
IKILENARTEANTEYRDYEKDQMRAYDMLAAYYVQEANREKTKDKKRELFMKATHLYTTA
DKIIMYDQNHLLGRAYFCLLEGDKMEQADAQFNFVLNQSPSNIPSLLGKACIAFNKKDFR
GALAFYKKALRTNPNCPAAVRLGMGHCFLKMNNHEKARLAFERALELDPQCVGALVGLAI
SKLNLHQPEANRIGVQMLSKAYTVDSTNPMVLNHLANHFFFKKDYQKVQHLALHAFHNTE
NEAMRAESCYQLARSFHVQGDYDQAFQYYYQSTQFAPTNFVLPHYGLGQMYIQRGDAENA
AQCFEKVLKAQPGNYETMKILGSLYANSNSQSKRDIAKTHLKKVTEQFPDDVEAWIELAQ
ILEQNDLQGSLTAYATATQILREKVNEDIPPEILNNVAALHYRLGNLDEARNKLDAAIDR
AKIESEQDPQYYESISVTMKYNLGRLNEAMCAYDQADQLYKDILKEHPNYIDCYLRLGCM
ARDKGLIFVASDFFKDALKINTENPDTRSLLGNLHLAKMQWILGQKNFETILKNPATSQD
SYSLIALGNFWLQTLHLPNKEKDREKKHQESALSIYKQVLRTDPKNIWATNGIGAVLAHK
GCINEARDIFAQVREATAEFSDVWLNIAHIYVEQKQYVSAIQMYENCLKKFYRHNNVEVM
QYLARAYFRAGKLKEAKTTLLKARRVAPQDTVLLFNIALVLQRLAMLILKDEKSTLDVVL
QAVHELGLAHKYFTYLSVHGDKQRYNIALASVEANQCQDLLSQAQYHVSRARRIDEEERN
LRTKQEQERAAFKKRQEEERRVEAEKRRKAEEEMLAKREEYKEKTKGALLFSEPPPEKKK
GAGRGRRDEYVSDSGSGGDGNREGGDGEKPRKKATKGRKKREGKGDKRRRREHSGSDSDA
PREKRGRKKASKGSRPAKKAKDEGLSNKQKMRIVSKATISTSESESDKDNGRRSRSRSRS
SGSRSRSGSGSRSGSSRSRSRSGSSRSRSGSRSKSGSRSRSRSGSAHSRSRSRSVRSRSG
SRSRSNSRSRSRSKSGSRSRSRSVHSRSRSRSRSGTPASHRSGSVKSGSRSRSRSHSRSK
SRSRSNSGSPAKRSGSGSE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaattccggcacaattgaaattccgttgagagatacggacgaggtaatcgaattagat
ccagaacaattacccgatggcgaagaagtgctcagcattttgcggcaagaaggctcacaa
attaacacatgggttaatgttgcgcttgcctactataagcaaaataaaacacaggatttt
ataaaaattctggaaaatgcccgaactgaagcaaacaccgaatatcgtgactatgaaaag
gatcagatgcgagcgtatgatatgttggccgcctattatgtgcaagaggcaaatcgtgag
aaaaccaaggacaaaaaacgtgaattattcatgaaagcaacacatttgtatacaacggcc
gataaaattatcatgtacgatcaaaaccacttgttgggtcgagcatatttttgtttgctt
gaaggtgataaaatggaacaagccgatgcacaattcaatttcgtactgaatcaatcaccg
tcgaatattccatcactgttgggcaaggcatgcattgcgttcaataaaaaagattttcgc
ggtgcattggctttttacaagaaagcattacgcacgaatccaaattgtccggcagctgtg
cggcttggaatgggacattgttttttgaaaatgaacaaccatgaaaaggccagactggca
ttcgagagagcattggaattggatccacagtgtgtcggtgctttggttggtttggccata
tcgaaattgaacttacatcaaccggaagcgaatcgtattggtgttcaaatgttgtccaaa
gcttacactgtcgattcaacaaatccaatggttttgaatcatttagccaatcactttttc
ttcaagaaagactatcaaaaagtgcaacatttggctttgcatgcatttcacaataccgaa
aatgaagcgatgcgagctgaaagctgttatcaattggcgcgttcgttccacgttcagggt
gattacgatcaagcttttcagtattattaccaatcgacacaatttgcgccaacgaatttt
gtattgccacattacggcttgggtcaaatgtacattcaacgtggtgatgctgaaaatgcg
gctcaatgttttgaaaaggtgttgaaagcacagccgggcaactatgaaacgatgaaaatt
ctcggttcactgtacgcaaattcaaattcacaatcgaaacgcgacattgccaaaacgcat
ctcaaaaaagttaccgaacaatttcccgatgatgtcgaagcatggattgaattagcccag
attcttgagcaaaatgatttgcaaggttcattgacggcatatgcaacggccacacaaatt
ctaagagaaaaagtcaacgaagatataccaccggaaatactgaataatgtggccgctttg
cattatcgcttgggaaatttagatgaggcgagaaataaactggacgctgccattgaccgg
gctaagattgaatcggaacaagatccacaatactatgaatcaatttcagtcaccatgaaa
tataatttaggacgattaaatgaagcgatgtgtgcctatgaccaagccgatcaattgtac
aaagacattttgaaagagcatccaaattacattgactgctaccttcgattgggttgtatg
gcacgtgacaaaggtttgatttttgtcgcttccgattttttcaaagatgcattgaaaata
aacaccgaaaatccggacacgcgttcgctgctcggtaatttgcatttggcaaaaatgcaa
tggattttggggcagaaaaatttcgaaacaattcttaaaaatccggccacatcacaagat
tcatattcattgattgcgctgggtaatttttggttacaaacgctgcatttgccaaacaaa
gaaaaagatcgtgaaaagaaacatcaggaatcggcactatccatttataaacaagtgctt
cgaaccgatccaaaaaatatatgggccacaaatggtattggtgcagttttggcgcataaa
ggttgcatcaatgaggctcgtgacatttttgctcaagtgcgtgaagctaccgccgaattc
agtgatgtctggcttaatatcgctcacatttacgtggaacagaagcaatatgttagtgcc
attcaaatgtatgaaaattgtctcaagaaattttatcgacataataatgtagaagtcatg
cagtaccttgccagagcctatttccgggctggcaaattaaaagaagccaaaaccacattg
ttaaaagccagacgagtggcaccacaagacacggtgttgttgttcaatattgcacttgtc
ctgcaacgattagccatgttgattctgaaagatgaaaagtcaacgcttgatgttgtgcta
caagcagtccatgaattgggattggcacacaaatattttacttatctttcggtgcatggt
gataaacaacgatataacattgcattggccagtgttgaagcgaatcaatgtcaagattta
ttgtcacaggcacagtatcatgtctcacgagctcgtcgcatcgacgaagaggaacgtaat
ctgcgtacgaaacaagagcaagagcgtgccgcgttcaagaagcgacaagaagaagaacgt
cgtgtcgaagcggaaaaacggcgcaaagccgaagaagaaatgttggccaaacgtgaagaa
tacaaagaaaaaacgaaaggtgcactgttattctctgaaccaccgcctgaaaagaagaaa
ggcgcaggtagaggacgtcgcgatgaatatgtgtccgattcaggcagtggaggtgatgga
aatcgtgaaggtggtgacggtgaaaaaccgcgtaagaaggcaactaaaggaagaaagaaa
cgtgaaggcaaaggcgataaacgacgccgtcgagaacattcgggtagcgacagtgatgca
cctcgagaaaaacggggccgaaagaaggcatccaaaggttcaagaccagccaaaaaagcc
aaggacgaaggtctctccaacaaacagaaaatgcgaatcgtttcaaaagcaactatttca
acaagtgaatcagaatcggacaaagacaatggccgccgatcgcgtagtcgcagccgaagt
tcaggttcacgatcaagaagtggttcaggctcacgctccggatcatcacggtcacgatca
cgtagtggctcaagtcgatcacgtagtggcagccggtcaaaaagtggatcacgaagccgg
tctcgcagtggaagtgcccatagtcgcagccgtagtcgatctgtcagaagccgaagtgga
agcagatcacgttcgaattctcgttcacgtagtcggtcaaaaagtggatcacgaagtcgg
tctcgcagtgttcacagtcgtagtcgtagtcgtagtcgatctggaacacctgcatcacac
cgtagtggatctgttaaaagtggttctcgttcaagaagtcgcagtcacagtagaagtaaa
agcagaagtagaagtaattctggttcaccggcaaaacgaagtggatctggatcagaatag
DBGET
integrated database retrieval system
