Contarinia nasturtii (swede midge): 116352057
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Entry
116352057 CDS
T08003
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116352057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116352057
03009 Ribosome biogenesis [BR:
cns03009
]
116352057
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116352057
Spliceosome [BR:
cns03041
]
Complex A
U2 snRNP components
U2 related factors
116352057
Complex B
116352057
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116352057
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
90S particles
Helicases
116352057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
SRP54
ATPase
ResIII
ABC_tran
Flavi_DEAD
AAA_30
AAA_25
T2SSE
TsaE
AAA_16
Motif
Other DBs
NCBI-GeneID:
116352057
NCBI-ProteinID:
XP_031640170
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MSKRRIEMDPFIKKRREEKGIPVDSSATTASTAQPATTSNLLQSGTAIAATTATSRQNSV
NPLNNQAYSQRYYTLYRKRITLPVFEYRADFMRLLAENQCIVLVGETGSGKTTQIPQWCV
EYARSIGSKGVSCTQPRRVAAMSVAQRVSEEMDVILGQEVGYSIRFEDCSSPSTVLKYMT
DGMLLREAMSDPTLDGYQVILLDEAHERTLATDILMGVLKEVIRQRNDLKLVVMSATLDA
GKFQQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCELIEGDILMFLT
GQEEIEEACKRIKREIDNLGPELGELKCIPLYSTLPPNLQQRIFEPPPPNKANGAIGRKV
VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTK
PGKCFRLYTEKAYKNEMQSNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLM
RALELLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVP
QCFVRPNDVKKQADEAKMRFAHIDGDHLTLLNVYHAFKQSNEDTNWCYENFVNYRSLKQA
DNVRQQLSRIMDRFNLKRTSTDFSSKDYYINIRKALVQGFFMQVAHLERTGHYLTIKDNQ
VVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDVKPEWLLKIAPQYYDMNNFPQCEAK
RQLEVLQARIDSKQFQQGF
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacgcattgagatggatccattcattaagaaacggcgtgaagaaaaaggc
attccagttgattcgagtgcaacgacagcatcgaccgctcaaccagcaacaacgtcaaat
cttttacaaagtggcactgcgatagcagccaccacagcaacatcgcgtcaaaattcagtg
aatccattgaacaatcaagcttattcgcaacgatactacactctatatcgaaagcgtata
acattgccagtgtttgaatatcgtgccgattttatgcggttgttagccgaaaatcaatgc
atagtgcttgtgggagagactggaagtggtaaaacaacccaaattccacaatggtgtgtc
gaatatgctcgttcaattggttcaaagggagtttcatgtactcaaccacgtcgagtggct
gctatgtcagtggcccagcgtgtttcggaagaaatggatgtgatattgggtcaagaagtt
ggttatagtatccgtttcgaggattgttcatcaccatcaaccgtactcaaatacatgaca
gacggtatgttattgcgtgaagcaatgagtgatccaacattggacggatatcaagtgatt
ttactcgatgaggctcacgaacgtacattggccactgacattttgatgggcgtactgaaa
gaggtgattcgacagcgaaatgatttgaaattggtggttatgtctgccactttggatgcc
ggtaaatttcaacagtattttgataatgcaccattgatgaatgtaccgggtcgaacgcat
ccggtcgaaattttttatacacccgaaccggaacgtgattatttggaagcggctattcga
acagttattcaaattcatatgtgcgaattgattgagggtgatattttgatgtttttgacg
ggacaagaagaaattgaagaggcatgtaaacgaatcaaacgtgaaatcgataatttggga
ccggaattaggcgaattgaaatgtataccattgtattcgacattgccgccaaatctacag
caaagaattttcgaaccaccaccaccaaacaaagcgaacggtgcaattggccgaaaagtt
gttgtatcgacaaatattgctgaaacatcgttgaccattgatggtgtggtgtttgtcatt
gatccgggttttgctaaacaaaaagtctacaatccaagaattcgtgtcgaaagtttatta
gtttcaccgattagcaaagcatcggcacaacagcgtgctggtcgagcaggacgtacaaaa
ccaggaaaatgtttcagactttatacagaaaaagcgtacaaaaatgaaatgcagagcaac
acatacccggaaattttacgttcaaacttaggaactgttgtgttacaactgaaaaaattg
ggcattgatgatttggtgcatttcgattttatggacccaccggcaccagagacactgatg
cgtgcacttgagctattgaattatttagctgcacttgacgacgatggcaatttgacagac
ttgggcgctgtaatggctgaatttccgctggatccacagttagctaaaatgctcattgcc
agctgtaatcacaattgttcaaacgaaattctatctattacagccatgttgtcggtacct
caatgttttgttcgaccgaatgacgtcaaaaagcaagccgacgaagcaaaaatgcgtttt
gctcacattgacggtgaccacttgactttgctaaatgtataccatgcattcaaacagagt
aacgaagatacaaattggtgttacgaaaatttcgtcaactatcgatcgctgaagcaggcc
gacaatgtgcgtcaacaattgtcacgtattatggatcgttttaatttgaagcgaactagc
acagatttctcatcgaaggattattacataaatatcagaaaggccttagttcagggattc
ttcatgcaggttgcccatttagaacgcaccggacactatttaacgattaaagataatcaa
gtggtgcagttacatccgtcaacctgtctagatcataaaccagattgggttatatacaat
gaatttgttttaacaacgaaaaattacattcgaactgtgacagatgtaaaacctgaatgg
cttctgaaaatcgctccacaatattatgatatgaacaattttcctcaatgcgaagcaaaa
cgtcaacttgaagtgctacaagcccgaatcgattcgaaacaatttcaacaaggattttaa
DBGET
integrated database retrieval system
