Contarinia nasturtii (swede midge): 116352259
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Entry
116352259 CDS
T08003
Name
(RefSeq) periodic tryptophan protein 2 homolog isoform X1
KO
K14558
periodic tryptophan protein 2
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116352259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cns03009
]
116352259
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
116352259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WDR55
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_HPS5
NBCH_WD40
eIF2A
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_Vps41
RMC1_N
Beta-prop_SCAP
Beta-prop_TEP1_C
PD40
Beta-prop_DCAF4
WD40_like
Beta-prop_NUP159_NUP214
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_2nd
Beta-prop_LRRK2
WD40_RFWD3
Beta-prop_IFT122_2nd
WDR93
Beta-prop_SPT8
RRM_1
WD_LRWD1
Caudo_bapla_RBP
WDR54
DUF2850
Gmad1
Motif
Other DBs
NCBI-GeneID:
116352259
NCBI-ProteinID:
XP_031640576
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MKFSYKFSNLLGTIYRKGNVIFSNDGNSIISPVGNRITVYDLKNNKSKTLSLDSRYNYTA
IAISPNGCLMIALNEKGEAQMISMISQTVIYTHKFSETVNCIRFSPDGKYFAISRSHIVS
VYIVPGEISGDYGNFKAYRHFHGANDDVTWIDWSSDSKLLAIGARDNTTKLCAIDFLQNF
RPYQLAGHTDAIVGCFFEENSLDISTISRNGQLCIWECNLQLENLKPFNIKEEMADDETT
EDEIDTKKSLEEQNDDGSNIEQEDQLNEDDRIAITGRDDQGKIVTDESVKPHPFSYTRLA
RHYLLDDVRKTDSNAQLTAANYHQKTKLLITAYSNGCFFLHEMPDVNLIHSLSITEFAIE
TVVFNVTGDWIALGSSNLGQLLVWEWQSEQYIMKQQGHSSEMNCVAYSPDGQYLVTGGED
AKVKVWNVNNGFCFVTFSEHSSAITALEFSNNKKFLVSASLDGTVRAYDLVRYRNFRTFT
SPRPVQFSSLALDASGELVVAGGRDIFEIYLWSMKLGRLLEVLSGHEGPVVSLTFAPVAT
SSMLVSGSWDHTIRIWNCLESSGDHETIEIQSNVTAVAFKPDGEEVAVAALSGNINIFYY
CTSIIFLLGVSINFYR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcgtataagttttcaaatttactgggaacgatttatcgcaaaggaaatgtg
atattctcaaatgatggcaattctatcataagtccagtgggaaatcgaattacagtgtac
gatttaaaaaacaacaaatcgaaaactctctcattggatagccgttataattatactgcc
attgcaatttcgccaaatggatgtttaatgatagctcttaatgaaaaaggagaggcacaa
atgatcagtatgatatcacaaaccgtaatttatacgcataaattttcagaaacagtaaac
tgtatacgttttagtccggatggtaaatattttgccatttctcgatcacatattgtatct
gtttatattgtgcctggtgaaatatcgggtgattatggaaattttaaagcatatcgacat
ttccatggagccaatgatgatgttacatggatagactggtctagtgattcaaaattgttg
gcgattggtgcacgtgataatacaacaaaattgtgtgctattgactttttgcaaaatttc
cgaccataccaattagcaggtcatacagatgcaattgttggatgtttctttgaagaaaat
agtttagatattagcacaatcagccgaaatggtcagttatgcatttgggaatgtaattta
caattggaaaatttaaaaccattcaatatcaaagaagaaatggcagacgatgaaacgaca
gaagatgaaattgatacaaaaaaatcattggaagaacaaaatgatgatggttcaaatatc
gaacaagaagaccaattaaatgaagatgatcgtatagcgataactggtcgtgatgatcaa
ggaaaaattgttactgatgaatcagtaaaaccacatccatttagttatacgcgactggct
cgacactatcttcttgatgatgttcgcaaaaccgattcaaatgcacaactaacagccgcc
aattatcaccagaaaacgaaattgctaataacagcttattcgaacggttgtttttttcta
cacgaaatgcccgatgtgaatttgattcactcgctaagtattaccgaatttgcaattgaa
acagtcgtatttaacgtgactggtgattggattgcattaggttcatcaaatctcggtcaa
ttgctagtttgggaatggcaaagtgaacagtatattatgaaacaacaaggtcattcaagt
gaaatgaattgtgttgcctattcacccgatggccaatatcttgttactggtggtgaagat
gccaaagtaaaagtgtggaatgttaataatggattttgttttgtcacattcagtgaacat
tcgagcgcaatcactgctctagaatttagcaataataaaaagtttttagtgagtgcttca
ctcgatggtacagtgcgcgcctatgatttagtaagatatcgtaattttcggacatttaca
tcaccaagaccagttcaattttcgagtttagcacttgatgcatccggtgaattggttgtg
gctggcggaagagatattttcgaaatctatttgtggtcaatgaaattaggtcgattattg
gaagtattgagcggacatgaaggacctgtcgtttcacttacattcgctccggttgcaaca
tcatcaatgttggtgtctggatcatgggatcataccattcgcatttggaactgtcttgaa
tcatccggtgatcacgaaaccattgaaattcaatcgaatgttactgctgttgcatttaaa
ccggatggagaagaagttgccgttgccgcgcttagtggtaatattaatattttttattat
tgtacaagtataattttcctattgggtgtatcgattaatttttaccgctga
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